PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016481458.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 462aa MW: 50896.5 Da PI: 7.0974

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016481458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.4e-39	110	169	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_016481458.1 110 PDKILPCPRCNSMETKFCYYNNYNINQPRHFCKKCQRYWTAGGTMRNVPVGSGRRKNKSS 169 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	107	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-32	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.556	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MSEVRDPAIK LFGKTIRLPL DDLLDQRTSS ATITSHDDLI TFEAELTQSK NRDDFTNSSA 60 DKAVETETSS GISDDPKKED ADKETWSPKA TKKEDPSEAN VTQEKALKKP DKILPCPRCN 120 SMETKFCYYN NYNINQPRHF CKKCQRYWTA GGTMRNVPVG SGRRKNKSSP TTGYRHIMVS 180 DALQAARFEA AHGMNLPMLR ANGTVLACGS DKPLCDSMAS ILNLAEKSQN SVQNGSEQRT 240 PSACRGKETG NEISSGACST ASNSTHDSAW KNFQAFPPQV HHFPGHPWPY SYNAAPWTSA 300 VPQPNLAPRF PVPFYPAPPY WGCTVASPWN VPWVSPPASS PDCSVLSATP TSPTLGKHSR 360 DEHTLNPSNS EKEDPLQDID RERSVLVPKT LRVDDPDEAA KSSIWSTLGI QNEKNDSTNG 420 ARLFKAFNSK VDDQRNHESD ASLVLQANPA ALSRSLNFHE ST

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MSEVRDPAIK LFGKTIRLPL DDLLDQRTSS ATITSHDDLI TFEAELTQSK NRDDFTNSSA  60
DKAVETETSS GISDDPKKED ADKETWSPKA TKKEDPSEAN VTQEKALKKP DKILPCPRCN  120
SMETKFCYYN NYNINQPRHF CKKCQRYWTA GGTMRNVPVG SGRRKNKSSP TTGYRHIMVS  180
DALQAARFEA AHGMNLPMLR ANGTVLACGS DKPLCDSMAS ILNLAEKSQN SVQNGSEQRT  240
PSACRGKETG NEISSGACST ASNSTHDSAW KNFQAFPPQV HHFPGHPWPY SYNAAPWTSA  300
VPQPNLAPRF PVPFYPAPPY WGCTVASPWN VPWVSPPASS PDCSVLSATP TSPTLGKHSR  360
DEHTLNPSNS EKEDPLQDID RERSVLVPKT LRVDDPDEAA KSSIWSTLGI QNEKNDSTNG  420
ARLFKAFNSK VDDQRNHESD ASLVLQANPA ALSRSLNFHE ST

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016481458.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1S4AY86	0.0	A0A1S4AY86_TOBAC; cyclic dof factor 1-like
STRING	XP_009628724.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-91	cycling DOF factor 3