PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016481352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 148aa MW: 16648.7 Da PI: 5.2754 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 7 | 52 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W+ e + +a + ++ + +Wk+Ia ++ +tl+++k+++ XP_016481352.1 7 GWSREQNIVFENALAAYPEDfvdRWKKIAGDVP-VKTLEEIKNHYEL 52 6********************************.89*********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.365 | 1 | 54 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.4E-4 | 4 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-10 | 5 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-5 | 8 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MTEAKSGWSR EQNIVFENAL AAYPEDFVDR WKKIAGDVPV KTLEEIKNHY ELLLDDVSRI 60 ESGCVPLPCY NSFSDCSVSH ISDKRTGKKS GISAAINGER NDGGKFTSSD QDRRKGIAWT 120 DDEHKSIIVG LQSLQYNIKL NVCFDIYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-16 | 8 | 72 | 11 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016481352.1 | 1e-107 | PREDICTED: protein RADIALIS-like 6 | ||||
Swissprot | Q9FNN6 | 1e-37 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1S4AXI0 | 1e-106 | A0A1S4AXI0_TOBAC; protein RADIALIS-like 6 | ||||
STRING | PGSC0003DMT400065102 | 9e-53 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4149 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-40 | MYB family protein |
Publications ? help Back to Top | |||
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