PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016481268.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 750aa MW: 82065.8 Da PI: 5.6059 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 330.1 | 4.1e-101 | 388 | 749 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +++L+++Ae v++g+ laq +Larl+++ sp g+p+ R+a+y +eAL+ l+ ++++l + ps++ + + + ++ a+k fse+sP+ +f+++ XP_016481268.1 388 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFYCKEALQLLLHTNTNNLNNPSIPSSS-PFSLIFKIGAYKSFSEISPVAQFANF 481 689***************************************************88888876655544.467*********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+le ++g er+Hi+Dfdi++G QW++L+q+La R++g+p+l+iT+++sp+++++ el t+e L +fA+e++++fef++l ++l++ XP_016481268.1 482 TCNQALLEVLDGFERIHIVDFDIGYGRQWASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRESLIHFANEINMEFEFEILSIDSLNST-S 575 ************************************************************************************977766665.4 PP GRAS 192 eeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++L v+++Ea+aVnl ++ + + ++sl+ vL +vk+lsP++vv v++ +d+++ +F +++++ l+ ys l++sl+a + ++ +k XP_016481268.1 576 WSLppLVSENEAIAVNLPVSSLSSY--QLSLPL----VLGFVKQLSPRIVVSVDKGCDRTDLPFPNHVIQVLQSYSNLLESLDAV-NVNFDALQK 663 555334788**********877776..555555....*********************************************665.3466999** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er+ll+++i+ v+ + ++ e++++Wr+ + ++G++p+p+s++a++qa++++++++++g++ve+++ slvl+W++++L+s+SaWr XP_016481268.1 664 IERFLLQPRIERTVMGRFRS----PEKAQHWRALFLSSGLSPLPFSNFAESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELISASAWR 749 **************988777....9****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.415 | 361 | 729 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-98 | 388 | 749 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MKGMPLPFDF EGKGVLDLDV VLNKNSIFNS WNYNSKESCY LVNSPSAVLD IIRSPRPVTS 60 SSTLSSSFGG GGGGGGTAST DTAGAVSANP SSKWQQQQQQ DNTTATSSNV GGAAAESELL 120 QVAAATEGKK CGMEEWEGGL SESVMASPCQ EQSILGWIMG DVDDTSMSNL NKVLQVSGPM 180 DYEFNAGFGV VDQGFGVDQI GTSSFMPAIN SSSVSSFPPT TTRMNSDKIG LLSNIPTHLP 240 QNPIFPSFSN NLGPVSFSQT QQQQPFESTD LKPQSFHSQF LIDQHQTQIP QNPSFLLPLP 300 FAQQEQNLVL PPKAKRHNPG TLEQPGSQIS QGLFIDAGEQ QPTPSHQLQL LPHFRPGGPI 360 GTKPKMVGEE MGQFHQLQLQ QQQQQAIIDQ LFKAAELVQT GNPVLAQGIL ARLNHQLSPI 420 GKPFYRAAFY CKEALQLLLH TNTNNLNNPS IPSSSPFSLI FKIGAYKSFS EISPVAQFAN 480 FTCNQALLEV LDGFERIHIV DFDIGYGRQW ASLMQELALR SGGAPTLKIT ALASPSTHDQ 540 LELGLTRESL IHFANEINME FEFEILSIDS LNSTSWSLPP LVSENEAIAV NLPVSSLSSY 600 QLSLPLVLGF VKQLSPRIVV SVDKGCDRTD LPFPNHVIQV LQSYSNLLES LDAVNVNFDA 660 LQKIERFLLQ PRIERTVMGR FRSPEKAQHW RALFLSSGLS PLPFSNFAES QAECVVKRTP 720 VRGFHVEKRQ SSLVLCWQRK ELISASAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-36 | 387 | 749 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016481268.1 | 0.0 | PREDICTED: scarecrow-like protein 22 isoform X2 | ||||
TrEMBL | A0A1S4AXP8 | 0.0 | A0A1S4AXP8_TOBAC; scarecrow-like protein 22 isoform X2 | ||||
STRING | XP_009591500.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-123 | GRAS family protein |