PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481268.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 750aa    MW: 82065.8 Da    PI: 5.6059
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.14.1e-1013887492374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L+++Ae v++g+  laq +Larl+++ sp g+p+ R+a+y +eAL+  l+ ++++l +   ps++ + + + ++ a+k fse+sP+ +f+++
  XP_016481268.1 388 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFYCKEALQLLLHTNTNNLNNPSIPSSS-PFSLIFKIGAYKSFSEISPVAQFANF 481
                     689***************************************************88888876655544.467*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t+Nqa+le ++g er+Hi+Dfdi++G QW++L+q+La R++g+p+l+iT+++sp+++++ el  t+e L +fA+e++++fef++l  ++l++   
  XP_016481268.1 482 TCNQALLEVLDGFERIHIVDFDIGYGRQWASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRESLIHFANEINMEFEFEILSIDSLNST-S 575
                     ************************************************************************************977766665.4 PP

            GRAS 192 eeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++L   v+++Ea+aVnl ++  + +  ++sl+     vL +vk+lsP++vv v++ +d+++ +F +++++ l+ ys l++sl+a    + ++ +k
  XP_016481268.1 576 WSLppLVSENEAIAVNLPVSSLSSY--QLSLPL----VLGFVKQLSPRIVVSVDKGCDRTDLPFPNHVIQVLQSYSNLLESLDAV-NVNFDALQK 663
                     555334788**********877776..555555....*********************************************665.3466999** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +Er+ll+++i+  v+ + ++     e++++Wr+ + ++G++p+p+s++a++qa++++++++++g++ve+++ slvl+W++++L+s+SaWr
  XP_016481268.1 664 IERFLLQPRIERTVMGRFRS----PEKAQHWRALFLSSGLSPLPFSNFAESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELISASAWR 749
                     **************988777....9****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.415361729IPR005202Transcription factor GRAS
PfamPF035141.4E-98388749IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MKGMPLPFDF EGKGVLDLDV VLNKNSIFNS WNYNSKESCY LVNSPSAVLD IIRSPRPVTS  60
SSTLSSSFGG GGGGGGTAST DTAGAVSANP SSKWQQQQQQ DNTTATSSNV GGAAAESELL  120
QVAAATEGKK CGMEEWEGGL SESVMASPCQ EQSILGWIMG DVDDTSMSNL NKVLQVSGPM  180
DYEFNAGFGV VDQGFGVDQI GTSSFMPAIN SSSVSSFPPT TTRMNSDKIG LLSNIPTHLP  240
QNPIFPSFSN NLGPVSFSQT QQQQPFESTD LKPQSFHSQF LIDQHQTQIP QNPSFLLPLP  300
FAQQEQNLVL PPKAKRHNPG TLEQPGSQIS QGLFIDAGEQ QPTPSHQLQL LPHFRPGGPI  360
GTKPKMVGEE MGQFHQLQLQ QQQQQAIIDQ LFKAAELVQT GNPVLAQGIL ARLNHQLSPI  420
GKPFYRAAFY CKEALQLLLH TNTNNLNNPS IPSSSPFSLI FKIGAYKSFS EISPVAQFAN  480
FTCNQALLEV LDGFERIHIV DFDIGYGRQW ASLMQELALR SGGAPTLKIT ALASPSTHDQ  540
LELGLTRESL IHFANEINME FEFEILSIDS LNSTSWSLPP LVSENEAIAV NLPVSSLSSY  600
QLSLPLVLGF VKQLSPRIVV SVDKGCDRTD LPFPNHVIQV LQSYSNLLES LDAVNVNFDA  660
LQKIERFLLQ PRIERTVMGR FRSPEKAQHW RALFLSSGLS PLPFSNFAES QAECVVKRTP  720
VRGFHVEKRQ SSLVLCWQRK ELISASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-363877494375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481268.10.0PREDICTED: scarecrow-like protein 22 isoform X2
TrEMBLA0A1S4AXP80.0A0A1S4AXP8_TOBAC; scarecrow-like protein 22 isoform X2
STRINGXP_009591500.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-123GRAS family protein