PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016481267.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 754aa MW: 82578.3 Da PI: 5.6059

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016481267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	330.1	4.2e-101	392	753	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +++L+++Ae v++g+ laq +Larl+++ sp g+p+ R+a+y +eAL+ l+ ++++l + ps++ + + + ++ a+k fse+sP+ +f+++ XP_016481267.1 392 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFYCKEALQLLLHTNTNNLNNPSIPSSS-PFSLIFKIGAYKSFSEISPVAQFANF 485 689*************************************************88888876655544.467******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+le ++g er+Hi+Dfdi++G QW++L+q+La R++g+p+l+iT+++sp+++++ el t+e L +fA+e++++fef++l ++l++ XP_016481267.1 486 TCNQALLEVLDGFERIHIVDFDIGYGRQWASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRESLIHFANEINMEFEFEILSIDSLNST-S 579 ********************************************************************************977766665.4 PP GRAS 192 eeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++L v+++Ea+aVnl ++ + + ++sl+ vL +vk+lsP++vv v++ +d+++ +F +++++ l+ ys l++sl+a + ++ +k XP_016481267.1 580 WSLppLVSENEAIAVNLPVSSLSSY--QLSLPL----VLGFVKQLSPRIVVSVDKGCDRTDLPFPNHVIQVLQSYSNLLESLDAV-NVNFDALQK 667 555334788******877776..555555....*****************************************665.3466999 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er+ll+++i+ v+ + ++ e++++Wr+ + ++G++p+p+s++a++qa++++++++++g++ve+++ slvl+W++++L+s+SaWr XP_016481267.1 668 IERFLLQPRIERTVMGRFRS----PEKAQHWRALFLSSGLSPLPFSNFAESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELISASAWR 753 ************988777....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.359	365	733	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-98	392	753	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MKGMPLPFDF EGKGVLDLDV VLNKNSIFNS WNYNSKESCY LVNSPSAVLD IIRSPRPVTS 60 SSTLSSSFGG GGGGGGTAST DTAGAVSANP SSKWQQQQQQ DNTTATSSNV GGAAAESELL 120 QVAAATEGKK CGMEEWEGGL SESVMASPCQ EQSILGWIMG DVDDTSMSNL NKVLQVSGPM 180 DYEFNAGFGV VDQGFGVDQI GTSSFMPAIN SSSVSSFPPT TTRMNSDKIG LLSNIPTHLP 240 QNPIFPSFSN NLGPVSFSQT QQQQPFESTD LKPQSFHSQF LIDQHQTQIP QNPSFLLPLP 300 FAQQEQNLVL PPKAKRHNPG TLEQPGSQIS QGLFIDAGEQ QPTPSHQLQL LPHFRPGGPI 360 GTKPKMVGEE MGQFHQLQLQ QQQQQQQQQA IIDQLFKAAE LVQTGNPVLA QGILARLNHQ 420 LSPIGKPFYR AAFYCKEALQ LLLHTNTNNL NNPSIPSSSP FSLIFKIGAY KSFSEISPVA 480 QFANFTCNQA LLEVLDGFER IHIVDFDIGY GRQWASLMQE LALRSGGAPT LKITALASPS 540 THDQLELGLT RESLIHFANE INMEFEFEIL SIDSLNSTSW SLPPLVSENE AIAVNLPVSS 600 LSSYQLSLPL VLGFVKQLSP RIVVSVDKGC DRTDLPFPNH VIQVLQSYSN LLESLDAVNV 660 NFDALQKIER FLLQPRIERT VMGRFRSPEK AQHWRALFLS SGLSPLPFSN FAESQAECVV 720 KRTPVRGFHV EKRQSSLVLC WQRKELISAS AWRC

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MKGMPLPFDF EGKGVLDLDV VLNKNSIFNS WNYNSKESCY LVNSPSAVLD IIRSPRPVTS  60
SSTLSSSFGG GGGGGGTAST DTAGAVSANP SSKWQQQQQQ DNTTATSSNV GGAAAESELL  120
QVAAATEGKK CGMEEWEGGL SESVMASPCQ EQSILGWIMG DVDDTSMSNL NKVLQVSGPM  180
DYEFNAGFGV VDQGFGVDQI GTSSFMPAIN SSSVSSFPPT TTRMNSDKIG LLSNIPTHLP  240
QNPIFPSFSN NLGPVSFSQT QQQQPFESTD LKPQSFHSQF LIDQHQTQIP QNPSFLLPLP  300
FAQQEQNLVL PPKAKRHNPG TLEQPGSQIS QGLFIDAGEQ QPTPSHQLQL LPHFRPGGPI  360
GTKPKMVGEE MGQFHQLQLQ QQQQQQQQQA IIDQLFKAAE LVQTGNPVLA QGILARLNHQ  420
LSPIGKPFYR AAFYCKEALQ LLLHTNTNNL NNPSIPSSSP FSLIFKIGAY KSFSEISPVA  480
QFANFTCNQA LLEVLDGFER IHIVDFDIGY GRQWASLMQE LALRSGGAPT LKITALASPS  540
THDQLELGLT RESLIHFANE INMEFEFEIL SIDSLNSTSW SLPPLVSENE AIAVNLPVSS  600
LSSYQLSLPL VLGFVKQLSP RIVVSVDKGC DRTDLPFPNH VIQVLQSYSN LLESLDAVNV  660
NFDALQKIER FLLQPRIERT VMGRFRSPEK AQHWRALFLS SGLSPLPFSN FAESQAECVV  720
KRTPVRGFHV EKRQSSLVLC WQRKELISAS AWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-36	391	753	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016481267.1	0.0	PREDICTED: scarecrow-like protein 22 isoform X1
Refseq	XP_018623759.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A1S4AXB3	0.0	A0A1S4AXB3_TOBAC; scarecrow-like protein 22 isoform X1
STRING	XP_009591500.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-123	GRAS family protein