PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481211.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 788aa    MW: 90320.9 Da    PI: 7.0156
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.21.9e-3080174291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn YA++vGFs+r+s s++s+r+g i++r fvC +eg+r e++k        + +r+raetr+gCka+l+vk +++g+w+v+ +++eHnHel+p
  XP_016481211.1  80 FYNLYARRVGFSTRISMSRRSRRDGAIIQRSFVCAREGFRVEKEKPghdggGARIKRPRAETRVGCKAMLVVKIQNSGRWVVSGFVKEHNHELVP 174
                     9*****************************************9999999999999**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-2880174IPR004330FAR1 DNA binding domain
PfamPF105511.4E-31295387IPR018289MULE transposase domain
PfamPF044341.1E-10564609IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.967575611IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-8586613IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MEFEPLGIRN DVIEFDMFGL GVGDETIDIE HPIEEGENNQ LMDPFDGIVS GRISGEVYGD  60
MNLESYEGME FESEEAAKAF YNLYARRVGF STRISMSRRS RRDGAIIQRS FVCAREGFRV  120
EKEKPGHDGG GARIKRPRAE TRVGCKAMLV VKIQNSGRWV VSGFVKEHNH ELVPPDKVHC  180
LRSHRHVSGP AKLLIDTLQG AGIGPSGIMS ALIKEYGGIS SVGFTERDCR NYMRSSKQRT  240
LGGDPQTLLD YLKQKHLENP SFFYAVQGDE DHCMSNIFWA DPEARSNFIY FGDTVTFDTT  300
YRSNRYRLPF APFTGVKHHG QPVLFGCALL LNESEASFSW LFRTWLMAMC GKPPLSITTD  360
HDRVIRLAVR QVFPEARHRF CKWHIFKECQ EKLSHLLSEH INFEAEFHKC VSFTESIEEF  420
EACWFTLIDK YDLGENEWLQ AIYVDRKQWV PVYLRDTFFA EISVMQRSDS MNSYFDGYVN  480
ASTTLQQFIK LYEKAVESRY EKEVKADYDT MHIGPALKTP SPMEKQAAEI YTRKLFIKFQ  540
EELVETLTFL ATKVDDNEAT TVFQVAKFGE SHKSYLVHYN VREIKASCSC QMFEFSGLLC  600
RHILTVFRVT NVLTLPPCYV LKHWTRNAKS GLMLEEQTCN LLNNCQESFN VRYKNLQLEA  660
LKYVDEGVKD EECYQVAMDA LREAAHKVAI AKKTDGGVSN SSGTCKGESA TQESHVNNPF  720
EARQLGRCPS TPVDEQDKKI QKLTRKLERA RQKCELYRTN LLTVLKDIEQ LKLQLTVKVQ  780
SIKLGMKN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481211.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S4AX630.0A0A1S4AX63_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_009631560.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]