PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016481012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24929.7 Da PI: 6.9654 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.8 | 7.6e-15 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GV +++ +g + Ae rdp +g +r +lg++ tae+Aa a+++a+ k++g XP_016481012.1 103 RYIGVKRRP-WGTFSAEMRDPDRRG--ARLWLGTYETAEDAALAYDQAAFKIRG 153 699***9*9.**********95454..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-10 | 103 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-28 | 103 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-30 | 103 | 167 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-26 | 103 | 163 | No hit | No description |
PROSITE profile | PS51032 | 22.26 | 103 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 103 | 162 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.3E-8 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-8 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MNSADVTFSF SDFNLLESIK QHLLNDSDFS ETLSPMSSSN GLPNSPSSGF GSSLSAENSF 60 EISLSDQNFE ETIPNLEEKS ESEEEMKGNV VARENNAPED WRRYIGVKRR PWGTFSAEMR 120 DPDRRGARLW LGTYETAEDA ALAYDQAAFK IRGSRARLNF PHLIGSNMPK PARVTARRSR 180 TRSPEPLSSS STSSSVNVPR KRKIDVINSI AKVCHGWNLH MLL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-26 | 102 | 167 | 4 | 69 | ATERF1 |
3gcc_A | 5e-26 | 102 | 167 | 4 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ859157 | 0.0 | GQ859157.1 Nicotiana benthamiana ERF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781921.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Refseq | XP_016481012.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q40479 | 3e-37 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A1S4AWL1 | 1e-162 | A0A1S4AWL1_TOBAC; ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A1U7WX89 | 1e-162 | A0A1U7WX89_NICSY; ethylene-responsive transcription factor 2-like | ||||
STRING | XP_009781921.1 | 1e-162 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-23 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|