PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016481010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 24362.1 Da PI: 7.5619 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.8e-17 | 94 | 144 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +g+++AeIrdp +g +r +lg++ t+e+Aa a+++a+ k++g XP_016481010.1 94 RYIGVRRRA-WGKFAAEIRDPERRG--ARLWLGTYETPEDAALAYDQAAFKIRG 144 699***777.**********84444..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.972 | 94 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.12E-28 | 94 | 154 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-22 | 94 | 153 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-33 | 94 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-12 | 94 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-30 | 94 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 134 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MNPLDNATFF FSDLDFLDSI EHHLLNDSDF SNSFSPISSS SVATPNSPSS CFCSCLLDEN 60 IEETTTLESQ SEPEEPTQGL KAARAENTKQ NWRRYIGVRR RAWGKFAAEI RDPERRGARL 120 WLGTYETPED AALAYDQAAF KIRGSRARLN FPHLIGSNMP EPARVKGRRH NSRSLEPSSS 180 SSTTSSENGR RKRNIEVINS IAKAKLVGHI RDLEMSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-26 | 93 | 158 | 4 | 69 | ATERF1 |
3gcc_A | 3e-26 | 93 | 158 | 4 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB828150 | 0.0 | AB828150.1 Nicotiana tabacum ERF179 mRNA for ethylene response factor 179, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016481010.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A1S4AWM2 | 1e-158 | A0A1S4AWM2_TOBAC; ethylene-responsive transcription factor 2-like | ||||
STRING | XP_009609536.1 | 1e-119 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 6e-39 | ethylene-responsive element binding factor 13 |