PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016480744.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26046 Da PI: 4.8 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 46 | 96 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr + + +Wv+e+r+p+ + kr++lg++ tae+Aa+a++ a+++l+g+ XP_016480744.1 46 IYRGVRKRN-NDKWVCELREPN----TqKRIWLGSYPTAEMAARAHDVAALALRGH 96 69****888.8*********83....25**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.63E-27 | 45 | 105 | No hit | No description |
Pfam | PF00847 | 1.9E-12 | 45 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-20 | 46 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-26 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.824 | 46 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-28 | 46 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-7 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-7 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MMNNSISSCS SVIEAEASDE EVILLASNKP KKRAGRKKFK ETRHPIYRGV RKRNNDKWVC 60 ELREPNTQKR IWLGSYPTAE MAARAHDVAA LALRGHLATL NFVDSAWRLQ VPVSKDPKDL 120 RQAAARAAEA FWPGEETNVS YRGATNTDNG DEEMKAATEE NATTNCMQNV VTAENFMYSN 180 SCGEVGMFGT QEWQTNMEEG SLFSPNPCLL GSCFSWDDDV ESDVEVSLWS YSV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785658.1 | 1e-176 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Refseq | XP_016480744.1 | 1e-176 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | A0A1S4AVP2 | 1e-174 | A0A1S4AVP2_TOBAC; dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | A0A1U7X471 | 1e-174 | A0A1U7X471_NICSY; dehydration-responsive element-binding protein 1E-like | ||||
STRING | XP_009785658.1 | 1e-175 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 8e-33 | ERF family protein |