PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480696.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 595aa    MW: 69396.6 Da    PI: 6.8714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.1e-1663113255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++  g++v+e+ dp+   k kr++lg+f+ta eAa a+++a++kl+g
  XP_016480696.1  63 RYRGIRQRP-GGKFVSEVSDPTR--KGKRVWLGTFDTATEAAMAYDRAALKLRG 113
                     8********.9******888643..34*************************98 PP
2RWP-RK31.92.7e-104394632852
          RWP-RK  28 clTvLKriCRqyGIkRWPhRkiksl 52 
                     c ++LKr CR+y+I+RWPh k +++
  XP_016480696.1 439 CRSTLKRVCREYNISRWPHHKTRKV 463
                     99*******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.22E-2862121No hitNo description
PROSITE profilePS5103222.33963121IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2063122IPR016177DNA-binding domain
SMARTSM003804.2E-3263127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2863122IPR001471AP2/ERF domain
PfamPF008472.0E-1163113IPR001471AP2/ERF domain
PRINTSPR003674.1E-86475IPR001471AP2/ERF domain
PRINTSPR003674.1E-887103IPR001471AP2/ERF domain
PfamPF124362.9E-17122196IPR024729Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
PfamPF145331.6E-58206416IPR029346Ubiquitin carboxyl-terminal hydrolase, C-terminal
PfamPF020421.3E-8438463IPR003035RWP-RK domain
SuperFamilySSF542778.5E-18506593No hitNo description
PROSITE profilePS5174519.453510592IPR000270PB1 domain
SMARTSM006661.4E-14510592IPR000270PB1 domain
PfamPF005647.5E-15511591IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.2E-16512590No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MASLQQSTLD LITQLLLDDD AFLVSYGSSE TNTSFDSKTE LNRFKFEGKT EDSVQKMEDT  60
LKRYRGIRQR PGGKFVSEVS DPTRKGKRVW LGTFDTATEA AMAYDRAALK LRGSRAILNF  120
PRKLVHFRAL EKPKEEDFCL ELAKSDTYDD VVERVAQRLG VDDPSKIRLT PHNYYSQQPK  180
PNPIKYRSVD HLVDMLIHDN QISDILYYEV LDIPLPELQC LKTFKVDFHH SKKDEVEILN  240
VRLPKQSTVR DFLNGIKSKV ELSHPNAELR LLEIFYHKIF KIFPLTEKFE NINDQYWTLR  300
AEEIPEEEKN LGPHDRLIHV YHFTKETPQN QMPVQNFGEP FFLVIHEGET LAEIKVRIQK  360
KLQVPDEEFS KWKFAFLSLG HPEYLQDTDI VSSRFQRRYV YDAWEQYLGL EHADNTSRRP  420
YVSQVNSLVL XRLELITSCR STLKRVCREY NISRWPHHKT RKVYRRVSQG VSLQSAEQYV  480
EDTQQCPDLS HEKGTDLLAP AATEKPCDNL MTLKVTYRGD IIKFQLSPSA TRVELEVEVE  540
KRFNISLQRC SIKYQDDDDD WILITSNSDL RDGMNSLRLL GRTTMKLLVT PISET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2562124466ATERF1
3gcc_A3e-2562124466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRecognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480696.10.0PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like
SwissprotQ9FPT11e-157UBP12_ARATH; Ubiquitin carboxyl-terminal hydrolase 12
TrEMBLA0A1S4AVR80.0A0A1S4AVR8_TOBAC; ubiquitin carboxyl-terminal hydrolase 12-like
STRINGXP_009780863.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1571547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-26ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Yan N,Doelling JH,Falbel TG,Durski AM,Vierstra RD
    The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine.
    Plant Physiol., 2000. 124(4): p. 1828-43
    [PMID:11115897]
  2. Tamaoki M, et al.
    Transcriptome analysis of O3-exposed Arabidopsis reveals that multiple signal pathways act mutually antagonistically to induce gene expression.
    Plant Mol. Biol., 2003. 53(4): p. 443-56
    [PMID:15010611]
  3. Aguilar-Henonin L,Bravo J,Guzmán P
    Genetic interactions of a putative Arabidopsis thaliana ubiquitin-ligase with components of the Saccharomyces cerevisiae ubiquitination machinery.
    Curr. Genet., 2006. 50(4): p. 257-68
    [PMID:16897085]
  4. Liu Y, et al.
    Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development.
    Plant J., 2008. 55(5): p. 844-56
    [PMID:18485060]
  5. Ewan R, et al.
    Deubiquitinating enzymes AtUBP12 and AtUBP13 and their tobacco homologue NtUBP12 are negative regulators of plant immunity.
    New Phytol., 2011. 191(1): p. 92-106
    [PMID:21388379]
  6. Karampelias M, et al.
    ROTUNDA3 function in plant development by phosphatase 2A-mediated regulation of auxin transporter recycling.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(10): p. 2768-73
    [PMID:26888284]
  7. Derkacheva M, et al.
    H2A deubiquitinases UBP12/13 are part of the Arabidopsis polycomb group protein system.
    Nat Plants, 2016. 2: p. 16126
    [PMID:27525512]
  8. Jeong JS,Jung C,Seo JS,Kim JK,Chua NH
    The Deubiquitinating Enzymes UBP12 and UBP13 Positively Regulate MYC2 Levels in Jasmonate Responses.
    Plant Cell, 2017. 29(6): p. 1406-1424
    [PMID:28536144]
  9. Zhou H,Zhao J,Cai J,Patil SB
    UBIQUITIN-SPECIFIC PROTEASES function in plant development and stress responses.
    Plant Mol. Biol., 2017. 94(6): p. 565-576
    [PMID:28695315]
  10. An Z, et al.
    Regulation of the stability of RGF1 receptor by the ubiquitin-specific proteases UBP12/UBP13 is critical for root meristem maintenance.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(5): p. 1123-1128
    [PMID:29339500]