PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016480674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 38951.1 Da PI: 8.9865 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 189 | 235 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+ + gR +kqc++rw+++l XP_016480674.1 189 KGQWTIEEDRLLIHLVEKFGVRKWSQIAQLLK-GRIGKQCRERWHNHL 235 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 57.4 | 3.4e-18 | 243 | 283 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+ XP_016480674.1 243 LWTEEEDRILIEAHAEVGNK-WAEIAKRLP-GRTENSIKNHWN 283 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.628 | 184 | 239 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-15 | 188 | 237 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.26E-32 | 189 | 282 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.8E-16 | 189 | 235 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-26 | 190 | 241 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.07E-13 | 192 | 235 | No hit | No description |
SMART | SM00717 | 6.8E-18 | 240 | 288 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.892 | 240 | 290 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-23 | 242 | 289 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-17 | 243 | 283 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-13 | 244 | 286 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MELDPSNKQD LSFHPIFVPN NNSLKPELDD DFCIDSKDYF QDFQHLDLNF SLSGGVLPNY 60 TFNNTENFMI DTNGYDPFDP FSNEDNFSSL GDFNFSYELK PFDEENGNTI KENPMDVNYT 120 YNGCEDVKPL NFVVPDQSSS CVTNGSNCKL EIGELRKNKK VKRNDQSCLL SSSMKKLGRG 180 RNKKSKSAKG QWTIEEDRLL IHLVEKFGVR KWSQIAQLLK GRIGKQCRER WHNHLRPDIK 240 KDLWTEEEDR ILIEAHAEVG NKWAEIAKRL PGRTENSIKN HWNATKRRQF SRRKCRTKWP 300 RPSSLLQNYI KSLNLEKEAA KKILKLAMPQ TLVPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-45 | 189 | 290 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-44 | 189 | 290 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-44 | 189 | 290 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-45 | 189 | 290 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-45 | 189 | 290 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC219210 | 5e-79 | AC219210.1 Solanum lycopersicum chromosome 6 clone C06HBa0082B05, complete sequence. | |||
GenBank | AC232944 | 5e-79 | AC232944.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 6 clone LE_HBa-24A16, complete sequence. | |||
GenBank | HG975518 | 5e-79 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016480674.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 5e-79 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A1S4AVH3 | 0.0 | A0A1S4AVH3_TOBAC; transcription factor MYB98-like | ||||
STRING | XP_009603629.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-79 | myb domain protein 98 |
Publications ? help Back to Top | |||
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