PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480477.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 357aa    MW: 39914.5 Da    PI: 7.1386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.14.9e-101011441858
                     -SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY  18 sefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +   r YYrC+ +   +C ++k v+rs+++p ++e++Y ++H +
  XP_016480477.1 101 NSRKREYYRCARRhlsKCIATKMVKRSDTEPPIFEVIYGESHSC 144
                     56689******98889**************************98 PP
2AP2476.3e-15294342355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+A Irdp+    r +r++lg+f+   +Aa a++ a+ +l+g
  XP_016480477.1 294 YRGVRQRS-WGKWAADIRDPK----RgARVWLGTFDNSHDAAVAYDDAAYRLYG 342
                     9****999.**********83....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.3E-595146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-9101146IPR003657WRKY domain
PfamPF031061.6E-9101144IPR003657WRKY domain
SuperFamilySSF1182909.55E-9101146IPR003657WRKY domain
PROSITE profilePS508118.582101143IPR003657WRKY domain
SuperFamilySSF541712.48E-20293351IPR016177DNA-binding domain
PROSITE profilePS5103222.497293350IPR001471AP2/ERF domain
SMARTSM003807.8E-32293356IPR001471AP2/ERF domain
PfamPF008471.1E-8293342IPR001471AP2/ERF domain
CDDcd000181.88E-20293351No hitNo description
Gene3DG3DSA:3.30.730.107.0E-29293351IPR001471AP2/ERF domain
PRINTSPR003673.7E-9294305IPR001471AP2/ERF domain
PRINTSPR003673.7E-9316332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGEENCWERE VVITELTKGR ELMCQLQKHF DPMKQDVCQY LSVEILSSYD KALSLLNGTA  60
LSVMSKGKQI INSAPSSSTA KLESPHLPVD SSTKSSDRPS NSRKREYYRC ARRHLSKCIA  120
TKMVKRSDTE PPIFEVIYGE SHSCGQESKN QNEDLPAPVL TVLTKEKQSE EVGRRGEISE  180
SDIAEMVSTP NNSFNNSSTG VVFSSNSNSN SLFNIANSDF ISTPTSSPHP DWNFLSFDDD  240
ARLTALLNDG PENVSCTYKG VDFISTPTSV RNLLLDDSLT TLSNSAPQNA RRIYRGVRQR  300
SWGKWAADIR DPKRGARVWL GTFDNSHDAA VAYDDAAYRL YGKNARVNFP ERYMKHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22294352362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480477.10.0PREDICTED: probable WRKY transcription factor 41 isoform X2
TrEMBLA0A1S4AUS30.0A0A1S4AUS3_TOBAC; probable WRKY transcription factor 41 isoform X2
STRINGXP_009793242.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-19related to AP2 6l