PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480425.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26470.9 Da    PI: 8.8679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18100154256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk q   Lee F+++++++ +++++LA+kl++  rqV vWFqNrRa+ k
  XP_016480425.1 100 RKKLRLTKVQSALLEESFKQHSTLNPKQKQHLARKLNVRPRQVEVWFQNRRARTK 154
                     678899***********************************************98 PP
2HD-ZIP_I/II116.51.6e-37100189191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k q++lLEesF+++++L+p++K++lar+L+++prqv+vWFqnrRARtk+kq+E+d e+L++++++l++en++L kev+eL+ +l
  XP_016480425.1 100 RKKLRLTKVQSALLEESFKQHSTLNPKQKQHLARKLNVRPRQVEVWFQNRRARTKLKQTEVDSEFLRKCCETLTDENKKLYKEVQELK-AL 189
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.97E-1889157IPR009057Homeodomain-like
PROSITE profilePS5007116.74696156IPR001356Homeobox domain
SMARTSM003891.6E-1498160IPR001356Homeobox domain
PfamPF000468.3E-16100154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-17100154IPR009057Homeodomain-like
CDDcd000865.72E-16100157No hitNo description
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
SMARTSM003401.2E-21156199IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-7156190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGFDDICGTG LTLGFGFSST ANNQRSRKPP ADKGGSLSFE PSLTLSLSKD KSADHLSSST  60
YSNASVKRER DIGSEETEVE RVLSYRVSDE DLADDGSNGR KKLRLTKVQS ALLEESFKQH  120
STLNPKQKQH LARKLNVRPR QVEVWFQNRR ARTKLKQTEV DSEFLRKCCE TLTDENKKLY  180
KEVQELKALK LAQPLYMQLP AAATLTVCPS CERVADAGEN APTKPHFCGP FTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480425.11e-177PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466033e-84HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A1S4AV251e-176A0A1S4AV25_TOBAC; homeobox-leucine zipper protein HAT22-like
STRINGXP_009796334.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-86HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]