PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480190.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 274aa    MW: 30909.3 Da    PI: 10.1565
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind48.34.1e-15341121696
       GAGA_bind  16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalp 96 
                     +++++   +++++  + aerda+++er+ a++ek+ ++aerd a +qrd+a+aer+ a+ erdn+++all++e +++ +l+
  XP_016480190.1  34 DQEAFI--MNTKIRMLCAERDAAVEERDRAVIEKNTVLAERDLAIQQRDTAIAERDTAIKERDNAIAALLFQESTMNGTLG 112
                     223444..7888888899*****************************************************9999874443 PP
2GAGA_bind250.51e-76122274148301
       GAGA_bind 148 kkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
                     ++  k  + k++k +k     +k++k +++ +++ + + skae++ +dl ++n++++Des++P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S 
  XP_016480190.1 122 NQIAKALQVKRTKGNKGM--SRKTKKVNEDLNRHLTTDGSKAEWDAQDLgSINQIKFDESSMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSE 214
                     222233333333333322..2333444555555555567**********88******************************************** PP

       GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     yPLP+ +++r+aRi+grKmS+++f++lL +Laa G+dls p+DLk++WAkHGtn+++ti+
  XP_016480190.1 215 YPLPQLPNKRHARIGGRKMSGSVFSRLLTRLAAVGHDLSLPIDLKTYWAKHGTNRYITIK 274
                     ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.7E-1071274IPR010409GAGA-binding transcriptional activator
PfamPF062172.8E-821274IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDDGGRRESR RHRMDCSKGG HAPWNVVPPY QMKDQEAFIM NTKIRMLCAE RDAAVEERDR  60
AVIEKNTVLA ERDLAIQQRD TAIAERDTAI KERDNAIAAL LFQESTMNGT LGCRTRGTKR  120
PNQIAKALQV KRTKGNKGMS RKTKKVNEDL NRHLTTDGSK AEWDAQDLGS INQIKFDESS  180
MPIPVCTCTG IPRQCYKWGS GGWQSSCCTT YLSEYPLPQL PNKRHARIGG RKMSGSVFSR  240
LLTRLAAVGH DLSLPIDLKT YWAKHGTNRY ITIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130144KRTKGNKGMSRKTKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823151e-164FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627340.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X2
RefseqXP_016480190.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X2
SwissprotQ8S8C61e-104BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A1S4AUE20.0A0A1S4AUE2_TOBAC; protein BASIC PENTACYSTEINE4-like isoform X2
STRINGXP_009627338.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-107basic pentacysteine 4