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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016480188.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 306aa MW: 34328 Da PI: 9.607 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016480188.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 310.2 | 7.2e-95 | 34 | 306 | 16 | 301 |
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksids 110
+++++ +++++ + aerda+++er+ a++ek+ ++aerd a +qrd+a+aer+ a+ erdn+++all++e +++ +l g+ +gtk ++
XP_016480188.1 34 DQEAFI--MNTKIRMLCAERDAAVEERDRAVIEKNTVLAERDLAIQQRDTAIAERDTAIKERDNAIAALLFQESTMNGTL--GC-RTRGTKRPNQ 123
223444..7888888899*****************************************************999866544..33.4578888776 PP
GAGA_bind 111 lqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslD 204
++++ + +ds r+ ++a+pi+ +e+ ++ ++k r +++k ++k +kk +e+ +++ ++++ skae++ +dl ++n++++D
XP_016480188.1 124 SKNHC-DNSTDSICINRDVPLTDAFPISAISSEVAKALQVK-RTKGNKGMSRK---TKKVNEDLNRHLTTDG----SKAEWDAQDLgSINQIKFD 209
66644.44444444458999999999999988888888877.33333333333...4443445556555555....89********88******* PP
GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299
es++P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aRi+grKmS+++f++lL +Laa G+dls p+DLk++WAkHGtn+++t
XP_016480188.1 210 ESSMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHARIGGRKMSGSVFSRLLTRLAAVGHDLSLPIDLKTYWAKHGTNRYIT 304
*********************************************************************************************** PP
GAGA_bind 300 ir 301
i+
XP_016480188.1 305 IK 306
*8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MDDGGRRESR RHRMDCSKGG HAPWNVVPPY QMKDQEAFIM NTKIRMLCAE RDAAVEERDR 60
AVIEKNTVLA ERDLAIQQRD TAIAERDTAI KERDNAIAAL LFQESTMNGT LGCRTRGTKR 120
PNQSKNHCDN STDSICINRD VPLTDAFPIS AISSEVAKAL QVKRTKGNKG MSRKTKKVNE 180
DLNRHLTTDG SKAEWDAQDL GSINQIKFDE SSMPIPVCTC TGIPRQCYKW GSGGWQSSCC 240
TTYLSEYPLP QLPNKRHARI GGRKMSGSVF SRLLTRLAAV GHDLSLPIDL KTYWAKHGTN 300
RYITIK
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 162 | 176 | KRTKGNKGMSRKTKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982315 | 1e-165 | FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds. |
