PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480126.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 380aa    MW: 43587.7 Da    PI: 9.4317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-1218106198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ ++++++k   l++p +f+ ++g + +    + le +sg  W++kl  +++ g+ +l++GW +F +   +  g f++Fk++g s f   v+
  XP_016480126.1  18 FFKIILSPHASK---LRIPDEFVMKYGANMRD--LVALEVPSGAIWKIKL--QNSNGMAWLKEGWDQFKEYYSIGCGYFLLFKYNGISHF--SVS 103
                     677776666665...67*********988655..7***************..********************************998999..999 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  XP_016480126.1 104 IFD 106
                     887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-1915115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39215108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1815108IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-1516106No hitNo description
SMARTSM010196.2E-1318108IPR003340B3 DNA binding domain
PfamPF023627.1E-1018106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVKRRRQAVN EAEITPQFFK IILSPHASKL RIPDEFVMKY GANMRDLVAL EVPSGAIWKI  60
KLQNSNGMAW LKEGWDQFKE YYSIGCGYFL LFKYNGISHF SVSIFDLSAS EIEYPSGPSE  120
DMTPENFVKI VGDASHRKKE GGPETNNNAC DDIVDDFLRK KTAKVTKVAD HSYSRRQKSS  180
VPEWQDRIRV NLEKPHVEED LYCATEKEKR KEIKKEKLEK QNMEKNLYHA ADKGKAEHCK  240
EALDPPASKM TNTCRCNKRK YSTSLKEPHC RHPLRSKSKP VEVVKLDQSK TEATMHCVKP  300
KNTVVADSSH SGRQKTAAPI SCPETKDPKK VKLEKVNSEE DFHCAAPKAR RGETNIEKLE  360
KQDVQQNLYA EAYKFKGIWF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480126.10.0PREDICTED: B3 domain-containing protein At4g34400-like isoform X1
TrEMBLA0A1S4AU630.0A0A1S4AU63_TOBAC; B3 domain-containing protein At4g34400-like isoform X1
STRINGXP_009797235.10.0(Nicotiana sylvestris)
STRINGXP_009626908.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-24B3 family protein