PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016480031.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 962aa MW: 105967 Da PI: 6.1167

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016480031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.5	5.2e-31	727	782	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY eClkNhAas+Ggha+DGCgEfmps g egt+ alkC AC+CHRnFHR++ + XP_016480031.1 727 SIRYMECLKNHAASMGGHAIDGCGEFMPS-GGEGTPGALKCEACNCHRNFHRKKIIN 782 789***********************9.8899*****************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14111	1.7E-6	225	304	IPR025558	Domain of unknown function DUF4283
Pfam	PF04770	1.1E-28	728	779	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-20	729	780	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-28	729	779	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.382	730	779	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MAASKMDIID SENQTKMKPD NHTAKVEGRD ETLGIMELDK NEHIGGGNEY GSKESEAAPK 60 NTHILEDGLY ISDSVDCVPE ATHSDSAERV ASPVNCSTAT SEIQASAETS CSGSSGLSFA 120 SDGIAGGIPS VMDDSSSMCS TDSMSFRGTY SNHNIQKLYG RGWKYGSKST SNAADWASEK 180 LNQPLDALPI GEHHEDRKSR PPIQVQYSTY RGRQAVTFPE NYWESLVPDC KLTLIGNFFQ 240 RKPRMKEIRA DFIAKNPLKG QVKITHYTSQ QVSLDFTNEA DYDTVLSKKT LTVAVMQISW 300 WSRDIHHEVG KQEWKAMDKE RDVKPGIMEQ QKTELDELIG GETEYKIDAP EAVLETPDIL 360 GEVSDVSNSL HIVPEVAHPD FRDNDASPVN CDTDTSKMHP SIGITCCQLS GISAPQNMID 420 GTSPYVMNVN SSKCSTYSIL SIVTTGLSSN DKDQSKSIRD VADSASKAHS QPLDDLPEAR 480 QQMLKKDVAV SHQSELTESD RERHSSEIPS VSSPPRSPPR SIGSVIQLMS KLKVSVTNDP 540 NSVKRSTSDN SNLTQKSVPL FNSAENAVLL SVDPHKSIEP KAIEKPLVRS ISITTENFPS 600 NQVTASATAE MPMPLLPTLP LLAHSVSPAA QLCADPPTAI DTYVPQSYPN GIVGSHIFGR 660 SEQAGSGSIF PSPSQALHQH SLAQRHSQLN SYKVDKNAHL DQESNMIAGP TQLQSLLTTS 720 VSDTTSSIRY MECLKNHAAS MGGHAIDGCG EFMPSGGEGT PGALKCEACN CHRNFHRKKI 780 INHRQMAGIG SHIEPRNNSN SRNIHKQSPI SQQYQHNYSY SPSSVVNSSD SYPQLPLPIS 840 GQICLPQGLE RKEPSLIRPS YSYEMVNHDT VQQWEYFWRD RSRNTSIDHP SLRNENQNFD 900 MFKPLNYRTS DNIPSEFANE FPHLDIINNL RYDEHGKGRT LMPNSGFQNL SNGSYHLNGH 960 FT

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MAASKMDIID SENQTKMKPD NHTAKVEGRD ETLGIMELDK NEHIGGGNEY GSKESEAAPK  60
NTHILEDGLY ISDSVDCVPE ATHSDSAERV ASPVNCSTAT SEIQASAETS CSGSSGLSFA  120
SDGIAGGIPS VMDDSSSMCS TDSMSFRGTY SNHNIQKLYG RGWKYGSKST SNAADWASEK  180
LNQPLDALPI GEHHEDRKSR PPIQVQYSTY RGRQAVTFPE NYWESLVPDC KLTLIGNFFQ  240
RKPRMKEIRA DFIAKNPLKG QVKITHYTSQ QVSLDFTNEA DYDTVLSKKT LTVAVMQISW  300
WSRDIHHEVG KQEWKAMDKE RDVKPGIMEQ QKTELDELIG GETEYKIDAP EAVLETPDIL  360
GEVSDVSNSL HIVPEVAHPD FRDNDASPVN CDTDTSKMHP SIGITCCQLS GISAPQNMID  420
GTSPYVMNVN SSKCSTYSIL SIVTTGLSSN DKDQSKSIRD VADSASKAHS QPLDDLPEAR  480
QQMLKKDVAV SHQSELTESD RERHSSEIPS VSSPPRSPPR SIGSVIQLMS KLKVSVTNDP  540
NSVKRSTSDN SNLTQKSVPL FNSAENAVLL SVDPHKSIEP KAIEKPLVRS ISITTENFPS  600
NQVTASATAE MPMPLLPTLP LLAHSVSPAA QLCADPPTAI DTYVPQSYPN GIVGSHIFGR  660
SEQAGSGSIF PSPSQALHQH SLAQRHSQLN SYKVDKNAHL DQESNMIAGP TQLQSLLTTS  720
VSDTTSSIRY MECLKNHAAS MGGHAIDGCG EFMPSGGEGT PGALKCEACN CHRNFHRKKI  780
INHRQMAGIG SHIEPRNNSN SRNIHKQSPI SQQYQHNYSY SPSSVVNSSD SYPQLPLPIS  840
GQICLPQGLE RKEPSLIRPS YSYEMVNHDT VQQWEYFWRD RSRNTSIDHP SLRNENQNFD  900
MFKPLNYRTS DNIPSEFANE FPHLDIINNL RYDEHGKGRT LMPNSGFQNL SNGSYHLNGH  960
FT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016480031.1	0.0	PREDICTED: uncharacterized protein LOC107801256 isoform X2
TrEMBL	A0A1S4ATW9	0.0	A0A1S4ATW9_TOBAC; uncharacterized protein LOC107801256 isoform X2
STRING	XP_009776472.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	5e-23	homeobox protein 21