PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016480030.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 1047aa MW: 116011 Da PI: 6.4677

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016480030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.3	5.7e-31	812	867	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY eClkNhAas+Ggha+DGCgEfmps g egt+ alkC AC+CHRnFHR++ + XP_016480030.1 812 SIRYMECLKNHAASMGGHAIDGCGEFMPS-GGEGTPGALKCEACNCHRNFHRKKIIN 867 789***********************9.8899*****************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14111	5.7E-9	15	95	IPR025558	Domain of unknown function DUF4283
Pfam	PF14111	1.9E-6	310	389	IPR025558	Domain of unknown function DUF4283
Pfam	PF04770	1.2E-28	813	864	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-20	814	865	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-28	814	864	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.382	815	864	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
MSRSNLFKMY WDAAAAKCRL TMVGKFFKRK PKMTAIRASF SAKYPLKDHV KIVSFDSLHV 60 FLDFTNEEDY DAIFFKETII VAGAQMEVFR WTPEFHGPFT KMKPDNHTAK VEGRDETLGI 120 MELDKNEHIG GGNEYGSKES EAAPKNTHIL EDGLYISDSV DCVPEATHSD SAERVASPVN 180 CSTATSEIQA SAETSCSGSS GLSFASDGIA GGIPSVMDDS SSMCSTDSMS FRGTYSNHNI 240 QKLYGRGWKY GSKSTSNAAD WASEKLNQPL DALPIGEHHE DRKSRPPIQV QYSTYRGRQA 300 VTFPENYWES LVPDCKLTLI GNFFQRKPRM KEIRADFIAK NPLKGQVKIT HYTSQQVSLD 360 FTNEADYDTV LSKKTLTVAV MQISWWSRDI HHEVGKQEWK AMDKERDVKP GIMEQQKTEL 420 DELIGGETEY KIDAPEAVLE TPDILGEVSD VSNSLHIVPE VAHPDFRDND ASPVNCDTDT 480 SKMHPSIGIT CCQLSGISAP QNMIDGTSPY VMNVNSSKCS TYSILSIVTT GLSSNDKDQS 540 KSIRDVADSA SKAHSQPLDD LPEARQQMLK KDVAVSHQSE LTESDRERHS SEIPSVSSPP 600 RSPPRSIGSV IQLMSKLKVS VTNDPNSVKR STSDNSNLTQ KSVPLFNSAE NAVLLSVDPH 660 KSIEPKAIEK PLVRSISITT ENFPSNQVTA SATAEMPMPL LPTLPLLAHS VSPAAQLCAD 720 PPTAIDTYVP QSYPNGIVGS HIFGRSEQAG SGSIFPSPSQ ALHQHSLAQR HSQLNSYKVD 780 KNAHLDQESN MIAGPTQLQS LLTTSVSDTT SSIRYMECLK NHAASMGGHA IDGCGEFMPS 840 GGEGTPGALK CEACNCHRNF HRKKIINHRQ MAGIGSHIEP RNNSNSRNIH KQSPISQQYQ 900 HNYSYSPSSV VNSSDSYPQL PLPISGQICL PQGLERKEPS LIRPSYSYEM VNHDTVQQWE 960 YFWRDRSRNT SIDHPSLRNE NQNFDMFKPL NYRTSDNIPS EFANEFPHLD IINNLRYDEH 1020 GKGRTLMPNS GFQNLSNGSY HLNGHFT

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

MSRSNLFKMY WDAAAAKCRL TMVGKFFKRK PKMTAIRASF SAKYPLKDHV KIVSFDSLHV  60
FLDFTNEEDY DAIFFKETII VAGAQMEVFR WTPEFHGPFT KMKPDNHTAK VEGRDETLGI  120
MELDKNEHIG GGNEYGSKES EAAPKNTHIL EDGLYISDSV DCVPEATHSD SAERVASPVN  180
CSTATSEIQA SAETSCSGSS GLSFASDGIA GGIPSVMDDS SSMCSTDSMS FRGTYSNHNI  240
QKLYGRGWKY GSKSTSNAAD WASEKLNQPL DALPIGEHHE DRKSRPPIQV QYSTYRGRQA  300
VTFPENYWES LVPDCKLTLI GNFFQRKPRM KEIRADFIAK NPLKGQVKIT HYTSQQVSLD  360
FTNEADYDTV LSKKTLTVAV MQISWWSRDI HHEVGKQEWK AMDKERDVKP GIMEQQKTEL  420
DELIGGETEY KIDAPEAVLE TPDILGEVSD VSNSLHIVPE VAHPDFRDND ASPVNCDTDT  480
SKMHPSIGIT CCQLSGISAP QNMIDGTSPY VMNVNSSKCS TYSILSIVTT GLSSNDKDQS  540
KSIRDVADSA SKAHSQPLDD LPEARQQMLK KDVAVSHQSE LTESDRERHS SEIPSVSSPP  600
RSPPRSIGSV IQLMSKLKVS VTNDPNSVKR STSDNSNLTQ KSVPLFNSAE NAVLLSVDPH  660
KSIEPKAIEK PLVRSISITT ENFPSNQVTA SATAEMPMPL LPTLPLLAHS VSPAAQLCAD  720
PPTAIDTYVP QSYPNGIVGS HIFGRSEQAG SGSIFPSPSQ ALHQHSLAQR HSQLNSYKVD  780
KNAHLDQESN MIAGPTQLQS LLTTSVSDTT SSIRYMECLK NHAASMGGHA IDGCGEFMPS  840
GGEGTPGALK CEACNCHRNF HRKKIINHRQ MAGIGSHIEP RNNSNSRNIH KQSPISQQYQ  900
HNYSYSPSSV VNSSDSYPQL PLPISGQICL PQGLERKEPS LIRPSYSYEM VNHDTVQQWE  960
YFWRDRSRNT SIDHPSLRNE NQNFDMFKPL NYRTSDNIPS EFANEFPHLD IINNLRYDEH  1020
GKGRTLMPNS GFQNLSNGSY HLNGHFT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016480030.1	0.0	PREDICTED: uncharacterized protein LOC107801256 isoform X1
TrEMBL	A0A1S4ATY6	0.0	A0A1S4ATY6_TOBAC; uncharacterized protein LOC107801256 isoform X1
STRING	XP_009776472.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14101	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	7e-23	homeobox protein 21