PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480025.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 179aa    MW: 21245.4 Da    PI: 10.5899
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.7e-18363257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+++t++ql +L++l++k   +p+ +e + ++++l    +++ ++V++WFqN++a++++
  XP_016480025.1  3 RTRWKPTPQQLMILQDLYRKgLTNPNSSEVQMITAHLsmygKIQWKNVFYWFQNHKARDRQ 63
                    89*****************99*************************************996 PP
2Wus_type_Homeobox105.14.5e-34264264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +rtRW Ptp+Q++iL++ly++Gl +Pn++e+q ita+L+ yGki+ kNVfyWFQN+kaR+rqk
     XP_016480025.1  2 PRTRWKPTPQQLMILQDLYRKGLTNPNSSEVQMITAHLSMYGKIQWKNVFYWFQNHKARDRQK 64
                       589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.187164IPR001356Homeobox domain
SMARTSM003898.5E-6168IPR001356Homeobox domain
SuperFamilySSF466898.13E-11269IPR009057Homeodomain-like
CDDcd000860.00229265No hitNo description
Gene3DG3DSA:1.10.10.602.0E-7268IPR009057Homeodomain-like
PfamPF000462.3E-15363IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MPRTRWKPTP QQLMILQDLY RKGLTNPNSS EVQMITAHLS MYGKIQWKNV FYWFQNHKAR  60
DRQKMKKQLL HKYPKDDIRQ LTINNNHVDK NPRSPSSSST TVNQVYSHSP PIFLHQVEAT  120
TEASPHMMNY LWENRMMRMN GRDWMLMRDK GSSNIVHCSN KVPLRTLELF PVETTGFKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611460.11e-133PREDICTED: WUSCHEL-related homeobox 3-like
RefseqXP_016480025.11e-133PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1S4ATY01e-132A0A1S4ATY0_TOBAC; WOX3c
STRINGXP_009611460.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-38WOX family protein