PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016479979.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 743aa MW: 85430.7 Da PI: 7.3541

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016479979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	28	115	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++ +gkw+++++++eHnHel p XP_016479979.1 28 EFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRSsNGKWYIHSFVKEHNHELLP 115 6**************************************999877....9****************9**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-24	28	115	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.3E-23	228	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.447	508	544	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.6E-8	518	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-7	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MESTVATENN NLEPRDDMEF DSHDAAYEFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSSNGKW YIHSFVKEHN HELLPAQVHF 120 FRSHRNVDPL KSDAKVRRKK MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGGAQ 180 VLLEFLVQMQ EENPKFFYSV DLNEEHRMRN VFWVDAKGMD NYSNFGDVVS FDTTYFTNKY 240 KIPLVLFIGA NHHVQPTLLG CALIADETVH TFIWLMRTWC LAMGGRGPKI LLSDQNDNIK 300 AAVGAIFPDT GHYFSLWSIL EKIPRHLEYL SLWHDTFMAK FTKCIYRSWT EEQYEHRWWK 360 LIEKFSLRED EWVQSLYENR KLWVPAFMRD VSFASLSTAS RSESVNSFFD KYIQSETSLR 420 GFIGQHKLIL EDWYEEEAKA NFDAWHEMPE LKSPSPFEKQ MLLIYTHEIF KKFQVEVLGA 480 AACHLKKETE DGTSITYAVK DFDANQDFMV EWDAPRSDIY CSCHSFEYKG YLCRHAIVVL 540 QMSGVFNIPS KYILQRWTNA AMSRHSISER LEDVQAKVRR YNDLCRRAII LGEEGSLTQE 600 SYNIAVGAIK EALKQCATVN VTFEANLRSG SCATLAIQGV NEVCQGNSLA ARELMPYSRA 660 AQTSKGSKRA DPGKERENND NTSNKKGKVT LEPEIPNGAQ GVFHQMDMPG SLDYPTLYPR 720 LTTLLRGGDI NKRSVELLGE MLE

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MESTVATENN NLEPRDDMEF DSHDAAYEFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRSSNGKW YIHSFVKEHN HELLPAQVHF  120
FRSHRNVDPL KSDAKVRRKK MLASVSKQYG AYQFSGNLEN LFRNQHDRGR SLTLEEGGAQ  180
VLLEFLVQMQ EENPKFFYSV DLNEEHRMRN VFWVDAKGMD NYSNFGDVVS FDTTYFTNKY  240
KIPLVLFIGA NHHVQPTLLG CALIADETVH TFIWLMRTWC LAMGGRGPKI LLSDQNDNIK  300
AAVGAIFPDT GHYFSLWSIL EKIPRHLEYL SLWHDTFMAK FTKCIYRSWT EEQYEHRWWK  360
LIEKFSLRED EWVQSLYENR KLWVPAFMRD VSFASLSTAS RSESVNSFFD KYIQSETSLR  420
GFIGQHKLIL EDWYEEEAKA NFDAWHEMPE LKSPSPFEKQ MLLIYTHEIF KKFQVEVLGA  480
AACHLKKETE DGTSITYAVK DFDANQDFMV EWDAPRSDIY CSCHSFEYKG YLCRHAIVVL  540
QMSGVFNIPS KYILQRWTNA AMSRHSISER LEDVQAKVRR YNDLCRRAII LGEEGSLTQE  600
SYNIAVGAIK EALKQCATVN VTFEANLRSG SCATLAIQGV NEVCQGNSLA ARELMPYSRA  660
AQTSKGSKRA DPGKERENND NTSNKKGKVT LEPEIPNGAQ GVFHQMDMPG SLDYPTLYPR  720
LTTLLRGGDI NKRSVELLGE MLE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016479978.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1
Refseq	XP_016479979.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1
Refseq	XP_016479980.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1S4ATH3	0.0	A0A1S4ATH3_TOBAC; protein FAR1-RELATED SEQUENCE 4-like isoform X1
STRING	XP_009600660.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]