PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479969.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 321aa    MW: 36008.4 Da    PI: 5.5446
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35121042103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d++++ li w +++nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++
  XP_016479969.1  12 FVLKTYQMVNDPKIDGLIAWGRENNSFIVVEPLDFSQRILPIYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTHLLKN 97 
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_016479969.1  98 IVRRKHS 104
                     ***9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-488101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-369101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.36E-339101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-2912101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEANNSNIVA PFVLKTYQMV NDPKIDGLIA WGRENNSFIV VEPLDFSQRI LPIYFKHNNF  60
SSFVRQLNTY GFRKVDPDKW EFANEWFLRG QTHLLKNIVR RKHSRNSYSL KQDESEDEEI  120
YTEIARLKQE QKALEQEVEN MTKRLEATEK RPQQMMAFLC KVVDDPEILP RILLEKERSK  180
RVSLNNSEKK RRIMISNNST SCSSVKSEEE VGGPLIGAIS SFRSPDANFD KDTLCQSSPS  240
SETPAMTWLS GRPMITYEPY RSCPAMSSSL SSGSSESGGF TTGPSSEAFS GYDYGGGGGG  300
SVAAEEVSPP PYPFSLLGGG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23310121129Heat shock factor protein 1
5d5v_B3e-23310121129Heat shock factor protein 1
5d5v_D3e-23310121129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770587.10.0PREDICTED: heat stress transcription factor C-1
RefseqXP_016479969.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV521e-89HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1S4ATG30.0A0A1S4ATG3_TOBAC; heat stress transcription factor C-1-like
TrEMBLA0A1U7VRR70.0A0A1U7VRR7_NICSY; heat stress transcription factor C-1
STRINGXP_009770587.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-90heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]