PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016479901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 514aa MW: 58335.1 Da PI: 5.8477 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 343.4 | 3.8e-105 | 135 | 513 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + Lle +a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ + + f+evsP+ +f+h++ XP_016479901.1 135 DILLETSRAIADKNSTRVQQLMWMLNELSSPYGDTEQKLASYFLQALFSRMTDSGERCYRTLVSASDKTCSFESTRKLVLKFQEVSPWTTFGHVA 229 6799**********************************************************8888876555555455555************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rl 186 N aI+ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+ ++ ++ ++e+g+r++kfA+ +gvpf+fnv+++ +l XP_016479901.1 230 SNGAIMEAFEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVVGGATggtaaVQKVMKEIGSRMEKFARLMGVPFKFNVIHHMgNL 324 ************************************************9998666678999999************************96656** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpr 277 ++l++ +L++k++Eala+n++ +lh++ + ++rd +++l+++l+P++v++ve+ead++ + +F+++f e+l++ + f+sl+ ++p+ XP_016479901.1 325 SELDVGALDIKEDEALAINCIGALHSVS----PAGNRRDYLISLFRRLQPRIVTIVEEEADLDVGvdgfDFVKGFQECLRWIRVYFESLDDSFPK 415 ***************************8....777889*********************99865556669************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvs 369 +s+er ++Er+ gr+iv+++ac +e+ er+et +kW++rl++ GF+pv +s+++ +++++llr++k +g+++ +s+ ++l Wk++p+v+ XP_016479901.1 416 TSNERLMLERQ-AGRSIVDLLACPPSESMERRETGAKWSHRLHAGGFSPVLYSDEVCDDVRALLRRYK-EGWSMTqcgGDSAGIFLSWKEQPVVW 508 ***********.********************************************************.7766663446799999********** PP GRAS 370 vSaWr 374 +SaW+ XP_016479901.1 509 ASAWK 513 ****8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.53 | 107 | 491 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-102 | 135 | 513 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0045930 | Biological Process | negative regulation of mitotic cell cycle | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 514 aa Download sequence Send to blast |
MDTLFRLVNL QQQQQQSDQS FNSSRTSSSS RSSNKQNTYT TYNYPSHHNQ EDEECFNFFM 60 DEDDFSSNSS SKHNNYPPPY HYQHHHQQQQ FSNTPTPTTT SSTPTQSHQY YDQFSPARDL 120 NLEFGSSFSG KWATDILLET SRAIADKNST RVQQLMWMLN ELSSPYGDTE QKLASYFLQA 180 LFSRMTDSGE RCYRTLVSAS DKTCSFESTR KLVLKFQEVS PWTTFGHVAS NGAIMEAFEG 240 ESKLHIIDIS NTYCTQWPTL LEALATRTDE TPHLRLTTVV VGGATGGTAA VQKVMKEIGS 300 RMEKFARLMG VPFKFNVIHH MGNLSELDVG ALDIKEDEAL AINCIGALHS VSPAGNRRDY 360 LISLFRRLQP RIVTIVEEEA DLDVGVDGFD FVKGFQECLR WIRVYFESLD DSFPKTSNER 420 LMLERQAGRS IVDLLACPPS ESMERRETGA KWSHRLHAGG FSPVLYSDEV CDDVRALLRR 480 YKEGWSMTQC GGDSAGIFLS WKEQPVVWAS AWKP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 0.0 | 79 | 514 | 2 | 420 | Protein SHORT-ROOT |
5b3h_E | 0.0 | 79 | 514 | 2 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016479900.1 | 0.0 | PREDICTED: protein SHORT-ROOT-like | ||||
Refseq | XP_016479901.1 | 0.0 | PREDICTED: protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 0.0 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A1S4ATK6 | 0.0 | A0A1S4ATK6_TOBAC; protein SHORT-ROOT-like | ||||
STRING | XP_009618165.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37650.1 | 0.0 | GRAS family protein |