PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479753.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 485aa    MW: 55698.4 Da    PI: 4.7165
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS171.37.4e-531134801374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l +lL +  ea+++g++ela+ ++  ++   +p g++++R+a+     L  ++ +         +    ++++s++   a+k+f++++Pi kf+h
  XP_016479753.1 113 LHHLLAAYGEAIENGHKELAEVIIRSIKGKINPLGESLERVASN----LFLQIED---------QEDYLKQESSKNLEVAFKVFYQIFPIGKFAH 194
                     579999***********************************975....7888998.........222222233566677899************* PP

            GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     ++aN+aI+e++  + e++Hi+Dfd+++G+QWp++++a+ +R++    +++T +++ +++   ++ + e +++rL ++A+ +g++++++ +   ++
  XP_016479753.1 195 FAANSAIMESIPDDvETIHIVDFDMGEGIQWPPIIEAMCQRRKA---MKLTSIKKTKEEstsDQWRFEDIKRRLLDYAKPFGLRLQIEEM---TV 283
                     ***********9999**************************776...999999997777788999***********************98...56 PP

            GRAS 187 edleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl.......sPkvvvvveqe...adhnsesFlerflealeyysal 267
                     e+l  e+ r+k+    +E l+ n++++l ++ + +  ++    e+Lkl k++          +v++ + e    +hn+++F + f + l yy ++
  XP_016479753.1 284 EELASEMRRMKKrgngNEWLVFNCMFKLPHMGKTRCRIHA--LEFLKLAKEMllansstHRGLVTFGDGEamdNSHNTNTFSTFFNKNLIYYQSI 376
                     6666666666666678***************977666666..566666654322221117789*****99433457899**************** PP

            GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslv 359
                     f+sle  +p+   e+r  +E  +l++++++    ++ e      + ++     +e G++  ++s+++  qak l+++ +     r+ee+ ++++v
  XP_016479753.1 377 FESLELYFPAYLaEARLAMESLFLAPQVCSFSWFQNWE------EIRNTCYSCGEIGLQGKRISKENLLQAKELVNEREtPLKVRIEEQrQHEMV 465
                     ********99877****************998888888......3333456799***********************99655588885549999* PP

            GRAS 360 lgWkdrpLvsvSaWr 374
                     l Wk+ +LvsvS W+
  XP_016479753.1 466 LEWKGTQLVSVSTWT 480
                     **************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.2487458IPR005202Transcription factor GRAS
PfamPF035142.6E-50113480IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MMQSELLHTE TEFCAIQIDQ DSSGIAFSDL TSLFPDDVFT DLSMDDLEFD DFCKWLNDSE  60
SEEENGNMNI SISCEMQKDG NLWSPAISGA SRNSAISLVI PGNSKELDTQ ISLHHLLAAY  120
GEAIENGHKE LAEVIIRSIK GKINPLGESL ERVASNLFLQ IEDQEDYLKQ ESSKNLEVAF  180
KVFYQIFPIG KFAHFAANSA IMESIPDDVE TIHIVDFDMG EGIQWPPIIE AMCQRRKAMK  240
LTSIKKTKEE STSDQWRFED IKRRLLDYAK PFGLRLQIEE MTVEELASEM RRMKKRGNGN  300
EWLVFNCMFK LPHMGKTRCR IHALEFLKLA KEMLLANSST HRGLVTFGDG EAMDNSHNTN  360
TFSTFFNKNL IYYQSIFESL ELYFPAYLAE ARLAMESLFL APQVCSFSWF QNWEEIRNTC  420
YSCGEIGLQG KRISKENLLQ AKELVNERET PLKVRIEEQR QHEMVLEWKG TQLVSVSTWT  480
RILSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-1312248028379Protein SCARECROW
5b3h_A2e-1312248027378Protein SCARECROW
5b3h_D2e-1312248027378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479753.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S4ATC00.0A0A1S4ATC0_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGPGSC0003DMT4000685070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.15e-20RGA-like protein 3