PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479584.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 770aa    MW: 85512.4 Da    PI: 5.9918
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.33.4e-05542602154
                     TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                     +rkRt ++++q+  +e++   ++ +  ++++ e  Ak+l     ++t++q k+W  Nr+a+
  XP_016479584.1 542 KRKRTIMNEKQISLMEKALMDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 602
                     79******************977761155678999*******9*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-5530603IPR009057Homeodomain-like
PROSITE profilePS5007110.981539606IPR001356Homeobox domain
SMARTSM003891.4E-4541610IPR001356Homeobox domain
CDDcd000864.61E-5542605No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MGLLHSTLVA SSLYLLTVCI SSQWHELAQV LLAYYKVDVL IDAAFAAVTV DIKILRRNLS  60
ADHTHSQQEY GLKAEETLNH LCQQCEASLQ FLQSLCQQKS FRERLVKNKE LSSKGGVLLL  120
AQAIMHLDVS PLVTLSSSIV AAVSRLKSKV LSILLNLCEA ESLSYLDEVA STPASLDLAK  180
SIALEVLNLL KKMFGTGFQQ SVAPSEKIYP KGQLQLNAMR LADIFSDDSN FRSFITTHFT  240
EVLTEIFSVA HGEFVSSWCS SDLPIREEDA TLEYDPFAAA GWVLDLFPFS DQSNTMSIEP  300
TFVPSHVPRL SYPHQRTSLL VKVLANLHCF VPDICKEEKD LFFNKFVQFL RTKVSKTPEG  360
FKSISDSHKA ATVSRNLGSL LSHAKSLIPA FLNEEDVQLL RVFITQLESL ITPRACGENR  420
VQEAQNLGAC LPPQLREVAM DLNNRLNQLN SRINGEGQSG EAGMKAEMTE QDKFIATDIE  480
MKDIEKDTQN VETSGSDSSS SRSRHPTDQA GKVEKINCNG PGEGREDEMV EASQHEEKQQ  540
RKRKRTIMNE KQISLMEKAL MDEPDMQRNK ASLEFWAKEL SVHGSEVTKS QLKNWLNNRK  600
ARLARAAKDG RTLSEGDNLD KHGGSLVLPP CDSPGSPVED VGNLSAAREN VQRVTDPVLS  660
TCFTENPAAV SVASTETAKC MAGQYVVLVN DKAEEIGRGK VCQVSGKWYQ RDLEELGTCV  720
VDIIDLKVDR SAKLPYPSEL TGTSFDQAER KFGFMRVLWQ SSKLFVLPAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2144631e-144AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence.
GenBankHG9754481e-144HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-144HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479583.10.0PREDICTED: nodulin homeobox-like isoform X1
RefseqXP_016479584.10.0PREDICTED: nodulin homeobox-like isoform X2
TrEMBLA0A1S4ASC20.0A0A1S4ASC2_TOBAC; nodulin homeobox-like isoform X2
TrEMBLA0A1S4ASV00.0A0A1S4ASV0_TOBAC; nodulin homeobox-like isoform X1
STRINGXP_009593093.10.0(Nicotiana tomentosiformis)