PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016479550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 29032.4 Da PI: 5.2149 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.7 | 1.2e-12 | 52 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e+ v+ ++lG++ W++Ia++++ gR ++++k++++++l XP_016479550.1 52 RGPFSMEEVEIVVKTYQELGNR-WSAIAARLP-GRIDNEVKNFFHTHL 97 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.588 | 17 | 46 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-10 | 30 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.37E-21 | 30 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.726 | 47 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-10 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-11 | 52 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-6 | 54 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 58 | 101 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MVSRGRPKIE ILYHEIWHLE LEPHAQICRI AGRTGKSCRL RWVNYLSPDV KRGPFSMEEV 60 EIVVKTYQEL GNRWSAIAAR LPGRIDNEVK NFFHTHLKKH LGVLKSTTRA RSNKRELKKT 120 KGNERKNADK RSPDPVSSSD SSSIITCEEN QMMDVTMSLY QTDGDCYNVV DQPNIEMEIS 180 PVILESNPDD GGTYNSNCQQ LHDQFEYSHE YISEYYSSFD SIDQFDMSSF WFDELWDAET 240 SDFLRDVITN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-17 | 30 | 101 | 37 | 108 | B-MYB |
1h8a_C | 9e-17 | 30 | 101 | 57 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016479550.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A1S4ASL4 | 0.0 | A0A1S4ASL4_TOBAC; transcription factor WER-like | ||||
STRING | XP_009626750.1 | 1e-151 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-31 | myb domain protein 15 |