PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016479548.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 282aa MW: 31947.9 Da PI: 5.2068

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016479548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.8	1e-12	72	112	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eE e ++ ++lG++ W+tIa++++ gRt++++k++++++l XP_016479548.1 72 EEERETVIKTYQELGNR-WSTIAARLP-GRTDNEVKNFFHTHL 112 688889*********.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.02E-12	52	116	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-19	57	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.083	60	116	IPR017930	Myb domain
SMART	SM00717	5.1E-8	64	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-10	72	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.35E-8	72	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDQISGAPPL LKWSDSKKYT QLPYKPSATP ELIPKRFKMP DVSKYNGTSD TEEHITAYLC 60 PDVMRGPFSI EEEERETVIK TYQELGNRWS TIAARLPGRT DNEVKNFFHT HLKKHLGLKY 120 DAPLKSTSRA RDNKRVLKKT KGNERTNADK RSPGHVSSSD SSNSITFEAN QMMDATMSLY 180 QTDGACYNVV DQPNIEMEIS PVILESNPET TSGINLGIAT CQLCQFEYPH PCTISDTATV 240 DFFDQFDHQI IWQQFLELVG VSDSILDEFF DSSFVAAMTK YM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016479548.1	0.0	PREDICTED: transcription repressor MYB4-like
TrEMBL	A0A1S4ASR7	0.0	A0A1S4ASR7_TOBAC; transcription repressor MYB4-like
STRING	XP_009626751.1	1e-176	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA24320	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	6e-21	myb domain protein 58