PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479524.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 329aa    MW: 36779.9 Da    PI: 4.5781
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18111158253
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     +y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA  a++  r+++
  XP_016479524.1 111 KYRGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNTAEEASLAYETKRLEF 158
                     8*******9.**********55.....45*******************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-12111158IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17111164IPR016177DNA-binding domain
CDDcd000183.86E-24111151No hitNo description
SMARTSM003802.4E-19111172IPR001471AP2/ERF domain
PROSITE profilePS5103220.363111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-22111165IPR001471AP2/ERF domain
PRINTSPR003674.1E-10112123IPR001471AP2/ERF domain
PRINTSPR003674.1E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MFEPRKQPQK SKNRVEPGQP MRKIRIVCND PDATDSSDDE RVNDIKPKLK RFVREINLPI  60
GNISSKKVKV KIPETTESSC QDSNNGEKNP KKKRVLAKTL SSNQQRLSPG KYRGVRQRKW  120
GKWAAEIRDP FKGRRVWLGT YNTAEEASLA YETKRLEFDS MAKNINNSSS NLSGKSSNNE  180
ENSAESLVSH TSHTSPASVL EMDSLTSASE VNDIKHDDEK AKVELGLMED SLSLAEIGAG  240
IEFDMEMDLF FAGSDDFGQN LDDFVVNDFE DLPIYGLEGD EQLPTSLPDF DFDFDFDGYN  300
ESCAWMDDAT AAPLMNGTTT TPLNIALCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-15112152344ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799139.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_009799140.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_016479524.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A1S4AS650.0A0A1S4AS65_TOBAC; ethylene-responsive transcription factor ERF118-like
TrEMBLA0A1U7YIQ00.0A0A1U7YIQ0_NICSY; ethylene-responsive transcription factor ERF118-like
STRINGXP_009799139.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-32ERF family protein