PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016479436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 247aa MW: 27700.9 Da PI: 7.3331 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.1 | 5.1e-40 | 25 | 84 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+a+kcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ s XP_016479436.1 25 EQAQKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRIS 84 7899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-29 | 22 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.7E-34 | 26 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.283 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSCQTLENML AYTNKQEKKP RPGAEQAQKC PRCDSTNTKF CYYNNYSLTQ PRYFCKSCRR 60 YWTKGGTLRN VPVGGGCRKN KRISSKKSQL DHESIANSAN YPLSSFTPLS CYESSDLSLA 120 FAKLQKQASG NLGIEENDMS MMCSNVYYDD FLGAQRGGFL ELTSNGFHHN MYYGKGNDGN 180 LGQVENGEIM GLNVNAEMGM LYDQEMIFPW QINGEVNNMS DFEASNRQNS NGFDSSFHGL 240 NHSGLIA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782595.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.3-like | ||||
Refseq | XP_016479436.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.3-like | ||||
TrEMBL | A0A1S4AS67 | 0.0 | A0A1S4AS67_TOBAC; dof zinc finger protein DOF5.3-like | ||||
TrEMBL | A0A1U7X7Z6 | 0.0 | A0A1U7X7Z6_NICSY; dof zinc finger protein DOF5.3-like | ||||
STRING | XP_009782595.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 6e-44 | TARGET OF MONOPTEROS 6 |