PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016479154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 755aa MW: 84300.3 Da PI: 6.4198 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.1 | 5.6e-22 | 97 | 152 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe+lF+++++p++++r++L+++lgL rqVk+WFqNrR++ k XP_016479154.1 97 KKKYHRHTAHQIRELEALFKESPHPDEKQRQQLSNQLGLHPRQVKFWFQNRRTQIK 152 79999***********************************************9877 PP | |||||||
2 | START | 222.2 | 1.6e-69 | 272 | 493 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 ++a++el k+a+ +ep+W ks e++n+de++++f+++k+ +s+ea+r++gvv m+l++lv+ ++d++ qW+et++ ka+tl+v XP_016479154.1 272 NQATEELKKMATFGEPLWIKSFetgrEILNYDEYMKEFPTEKSgeerltRSIEASRDTGVVSMDLPRLVQCFMDVN-QWKETFPgmitKASTLDV 365 67899****************99*****************999*********************************.****************** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 i++g ga+qlm+aelq+l+p+v R+++f+Ry++qlga++w+ivdvSvd +++ ++s++++++lpSg+++++ sn h+kvtwveh ++ XP_016479154.1 366 IRNGegdnwvGAVQLMFAELQMLTPVVGtRKVYFLRYCKQLGADQWAIVDVSVDKVEDNI-DASLMKCRKLPSGCILQDQSNAHCKVTWVEHLEC 459 **********************************************************98.9********************************* PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206 + +++h+l++ +v+sg+a+ga++w+atlq+qce+ XP_016479154.1 460 QQSTVHSLYHAIVNSGQAFGARHWMATLQQQCER 493 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.36E-21 | 85 | 155 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 85 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.896 | 94 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 96 | 158 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-19 | 97 | 152 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.43E-18 | 97 | 152 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 129 | 152 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 36.831 | 260 | 496 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.0E-32 | 262 | 494 | No hit | No description |
CDD | cd08875 | 1.72E-108 | 264 | 492 | No hit | No description |
SMART | SM00234 | 1.3E-62 | 269 | 493 | IPR002913 | START domain |
Pfam | PF01852 | 3.1E-56 | 272 | 493 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.9E-4 | 317 | 477 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.81E-12 | 525 | 747 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 755 aa Download sequence Send to blast |
MKFVDMSNNT PSNSHAKDFA SPALTLSLAG IFRDGAAGNE ETEEVDDGSA GGGRREETTM 60 VEISSENSVP LMSTLSRSRD DFDAENEDYD DPTNSKKKKY HRHTAHQIRE LEALFKESPH 120 PDEKQRQQLS NQLGLHPRQV KFWFQNRRTQ IKAIQERHEN SLLKTEIDKL SEVNKALRMA 180 MKKNIPSCPS CGFSSSSKEA AVVIPTQEQQ LRIENARPKT EVEKLRAELG KYTKGTSPTT 240 SSGGNDEENK NGLELQTDTF GLEKSRIMDI VNQATEELKK MATFGEPLWI KSFETGREIL 300 NYDEYMKEFP TEKSGEERLT RSIEASRDTG VVSMDLPRLV QCFMDVNQWK ETFPGMITKA 360 STLDVIRNGE GDNWVGAVQL MFAELQMLTP VVGTRKVYFL RYCKQLGADQ WAIVDVSVDK 420 VEDNIDASLM KCRKLPSGCI LQDQSNAHCK VTWVEHLECQ QSTVHSLYHA IVNSGQAFGA 480 RHWMATLQQQ CERLTFFKAT SVRIKDSTGP DVATLAGRKS ILKLAQRMTW SFCHAIGASS 540 YNKWDKIHSK TGDDIRVASR KNLTDPREPF GLILCATSSV WLPVSRNVLF DFLRDETRQH 600 ECNIMSNGGP VESIANLATG QDRGNAVTIQ AMKLKEDMWI LQDTCTNAYE STVVYAPIDI 660 GGMKSVMTGR DSSNVAVLPS GFSILPDGLE SRSLVITSRP EEKCTGGGSL LTVLYQILTS 720 NSPAVKLSKE SVESVNNLIS CTLHRIKTSL QCEDG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016479154.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2-like isoform X1 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A1S4AR42 | 0.0 | A0A1S4AR42_TOBAC; homeobox-leucine zipper protein GLABRA 2-like isoform X1 | ||||
STRING | XP_009611248.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6228 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|