PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016479134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 998aa MW: 110996 Da PI: 4.9292 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 36 | 80 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_016479134.1 36 QWTPEEDEILRQAVQLFKGKSWKRIAECFK-DRTDVQCLHRWQKVL 80 7****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 59.9 | 5.4e-19 | 86 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++v+++G++ W+tIa+++ gR +kqc++rw+++l XP_016479134.1 86 KGSWTKEEDDKLIELVNRYGPKKWSTIAQELA-GRIGKQCRERWHNHL 132 799*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 45.8 | 1.4e-14 | 138 | 180 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ a+ + gR+++ +k++w+ XP_016479134.1 138 KEPWTQEEELTLIRAHQVYGNK-WAELAKVLH-GRSDNAIKNHWH 180 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.74E-15 | 29 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.518 | 29 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-14 | 33 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-19 | 36 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-15 | 36 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-13 | 37 | 80 | No hit | No description |
PROSITE profile | PS51294 | 31.821 | 81 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-30 | 83 | 179 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-18 | 85 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.06E-16 | 88 | 132 | No hit | No description |
Pfam | PF13921 | 1.1E-19 | 89 | 147 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 90 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 137 | 185 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.233 | 137 | 187 | IPR017930 | Myb domain |
CDD | cd00167 | 1.02E-10 | 140 | 180 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 140 | 187 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 998 aa Download sequence Send to blast |
MESDKTSTTP SDDISSLQRV QPLNGRTSGP KRRSSQWTPE EDEILRQAVQ LFKGKSWKRI 60 AECFKDRTDV QCLHRWQKVL DPELVKGSWT KEEDDKLIEL VNRYGPKKWS TIAQELAGRI 120 GKQCRERWHN HLNPSINKEP WTQEEELTLI RAHQVYGNKW AELAKVLHGR SDNAIKNHWH 180 SSVKKKLDSY LASGLLAQFP ALPNVNHQNQ SVPSSSMTLQ QNSEDESVHK QGTEAEDSFV 240 KKKLDSYLAS GLLGQFPALP NVNHQNQSVP SSSMTLQQNS EDESVHKEGT EAEEVPECSQ 300 GSTFAGCSQS TSDLGNTFVH VRENGGMSEE SICKKDATSS TAPCCRNYNP VFQDVSCSML 360 KVPSELVDSK FLEHNLSHDW GNSMEEDWQF NRDDIPNISP PELIQESSGI SVHCLNGNEN 420 HDMEATTNVG NVVEGPYNPN EMFVCVDGCM MVYPEEGIPQ CSSETGVNGC GQPAYSLFYR 480 SSNYQIPEVG DMVPQNCNAL SFDDFEASSH QPFSVPLQFS SEDRSPVFDL VLNQFHNPPL 540 ESPDHMKDSS RIVPVNDLGS TTSNTVQTCL LNEKSFVQEK QKDGGGLCYD PPRFPSSDVP 600 FFCCDLMQSG SDTQEEYSPF GIRQLMMTSA NCLTPLRLWD SPSRDDSPDA ILKSAAKTFT 660 GTPSILKKRH RHLLSPLSEK RCEKRLESDL NQESFSNMTS NFSRLDDMFD ESANEKASME 720 DGENLPSSED GRKEEGEISG ANDAMGKVKQ PPGVLVELSS NDLFLSPDSF LIKCDRATSL 780 SNKALGKQYA RRLEAASNQV TVSSSFETSC FSVVCSPDIR GKRRSSVVLA TSAALGNTAE 840 DSENRFGTET LSISGETPYK RSFESPSAWK SPWFMNSFPP STRYDIELAF EDLARFMSPG 900 DRSYDAIGLM KQLSEQTAAS IADAHQILGS ETPETNLSKR NSKKQKADEI CKASNATSER 960 RTLDFNECGT PGKGKETTKF GSNNSFSSPS SYLLKYCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-63 | 30 | 187 | 7 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-63 | 30 | 187 | 7 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB056122 | 0.0 | AB056122.1 Nicotiana tabacum NtmybA1 mRNA for Myb, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016479134.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_016479135.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A1S4ARD8 | 0.0 | A0A1S4ARD8_TOBAC; myb-related protein 3R-1-like | ||||
STRING | XP_009627768.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-100 | Homeodomain-like protein |