PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016478876.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 374aa MW: 42052.7 Da PI: 8.4779

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	61	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG+++AtPk +l++m++kgL ++hvkSHLQ+YR+ XP_016478876.1 61 PRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQMMNIKGLNIAHVKSHLQMYRS 114 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-29	57	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.297	57	117	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-14	59	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-22	61	116	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-9	62	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MMEDSGETGC NSKTSSNSGK YEDDEENNSS KFKDGGSSSN STVEESEKKP SVRPYVRSKM 60 PRLRWTPDLH LRFIHAVERL GGQDRATPKL VLQMMNIKGL NIAHVKSHLQ MYRSKKMDDQ 120 SQGTAHHRLF MEGGDPNIYN LSQLPMFPTF HQRLNSTFRY EDASWNFHGN WTMGQRPLDR 180 SSRGFYTTLT ERIFGSNHGR EANEDLCKRN PSFISERSNL QTHEIKDEMG LSLEHESHSG 240 ELTPILSHIA AKAQARAINL QKQTPLKRKV SDCDLDLNLS LGVKPRNGSD NLRCTDFSKM 300 LPYSCPIFQR DTTFRGSNTQ SPSNNDDNDN GSSLSLSLSS PLSSSKVTRI KEDGNSNATT 360 ENARRGASTL DLTL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MMEDSGETGC NSKTSSNSGK YEDDEENNSS KFKDGGSSSN STVEESEKKP SVRPYVRSKM  60
PRLRWTPDLH LRFIHAVERL GGQDRATPKL VLQMMNIKGL NIAHVKSHLQ MYRSKKMDDQ  120
SQGTAHHRLF MEGGDPNIYN LSQLPMFPTF HQRLNSTFRY EDASWNFHGN WTMGQRPLDR  180
SSRGFYTTLT ERIFGSNHGR EANEDLCKRN PSFISERSNL QTHEIKDEMG LSLEHESHSG  240
ELTPILSHIA AKAQARAINL QKQTPLKRKV SDCDLDLNLS LGVKPRNGSD NLRCTDFSKM  300
LPYSCPIFQR DTTFRGSNTQ SPSNNDDNDN GSSLSLSLSS PLSSSKVTRI KEDGNSNATT  360
ENARRGASTL DLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804663.1	0.0	PREDICTED: two-component response regulator ARR10-like
Refseq	XP_016478876.1	0.0	PREDICTED: two-component response regulator ORR24-like
TrEMBL	A0A1S4AQL4	0.0	A0A1S4AQL4_TOBAC; two-component response regulator ORR24-like
TrEMBL	A0A1U7YNJ2	0.0	A0A1U7YNJ2_NICSY; two-component response regulator ARR10-like
STRING	XP_009804663.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	5e-59	G2-like family protein