 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016478822.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 252aa MW: 28176.9 Da PI: 8.5885 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016478822.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 174 | 2.1e-53 | 1 | 252 | 1 | 240 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki.......rernlalsekkaavaerd............................ma 59
md +g++ rn+g++ep + lk +lglqlmss+ e+ + +++++ ++++++++ ++
XP_016478822.1 1 MDGNGMNIRNWGFFEPPaTVLKGHLGLQLMSSMDEK---PlfgnihdHHHHHHHHHNHQTHQ--PhhptvmestnggafhhhrvcgisetpmpIE 90
88888877*******98899*************666...33345544333332333333333..245888999999999999*********9999 PP
GAGA_bind 60 flqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrq 154
+ +rd+++++ + ++k+l++l ++ + +g++ l++t+s++s+q +++p+l + + + ee ++ +k+ k+q
XP_016478822.1 91 Y-MRDSWVNH-----KDYRDKYLNVLSGNH----HYLTGYGFLPETSSAQSMQIHEQPNLVKVEPDPQLEEVCQERD----IGGLAKKRGAGKSQ 171
9.9******9.....566789999888555....57789***************88888877666633333333333....23333334444456 PP
GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240
k+pk+kkakk+++ ++k + +++s+ +r++a++ks ++v+ng+++D+s +P+PvCsCtGa +qCY+WG+GGWqSaCCtt++S
XP_016478822.1 172 LLKSPKSKKAKKATR---VPKVE-ATPSV-PRARAPRKSAEVVINGITMDISVFPIPVCSCTGAAQQCYRWGCGGWQSACCTTNLS 252
666666666666666...44333.44443.79****************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MDGNGMNIRN WGFFEPPATV LKGHLGLQLM SSMDEKPLFG NIHDHHHHHH HHHNHQTHQP 60
HHPTVMESTN GGAFHHHRVC GISETPMPIE YMRDSWVNHK DYRDKYLNVL SGNHHYLTGY 120
GFLPETSSAQ SMQIHEQPNL VKVEPDPQLE EVCQERDIGG LAKKRGAGKS QLLKSPKSKK 180
AKKATRVPKV EATPSVPRAR APRKSAEVVI NGITMDISVF PIPVCSCTGA AQQCYRWGCG 240
GWQSACCTTN LS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982310 | 0.0 | FJ982310.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC5) mRNA, complete cds. |
| GenBank | FJ982311 | 0.0 | FJ982311.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC5) gene, complete cds. |
| GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
