PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016478790.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 217aa MW: 24884.2 Da PI: 10.3694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.5	2.8e-20	51	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ + ++++r r gC+a++ vk+ek g+w+v k++ +HnH+l+ XP_016478790.1 51 YYDEYAGRAGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRSG---SIANQKRDRRRDGCTAMILVKREKPGTWVVRKFVRDHNHPLV 136 8*******************************7555555544...4588999999****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-18	51	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MMTMDVQISE DSGARRLESS AIGQVSTSEA DRTQEPYEGM IFESEEAARA YYDEYAGRAG 60 FITRVLSSRK SERDGSIISR GLGCRGIPDN QRSGSIANQK RDRRRDGCTA MILVKREKPG 120 TWVVRKFVRD HNHPLVISPS KRRPTFDEKD KKIQELTAEL RIKKRLSAAY REQLLSLMKD 180 VDSHSEHMST KVQAVRRILK ELEAKKQELS NHSRHHK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-158	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016478790.1	1e-160	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A1S4AQE7	1e-158	A0A1S4AQE7_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRING	XP_009605654.1	1e-157	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-48	FAR1 family protein