PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016478675.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 304aa MW: 34207.9 Da PI: 5.7602 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 77 | 135 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ XP_016478675.1 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 135 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-31 | 73 | 137 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 75 | 137 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-36 | 76 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.409 | 77 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 78 | 135 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MDGRFNNIFL SHEQEDSENS PENSLDSPRS DMFNDNKMMT STSSPKRRRS IQKRVVSVPI 60 KEVEGSKMKG EISMPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD 120 PNMLVVTYSC EHNHPWPASR NNQHNQRTTT TTSCTNNAKT KTKTLASLTA AATTIITTTN 180 IVVSDIEREK DTSNFASQSE PNSDEKFTNL GESSLISCNE FGWFSDFECS STTMLESPIL 240 TEVDVTDIDM SSTLTTLREE DDSLFADLGE LPECSRVFGR GMMERDEERR RHSLSLTPWC 300 GTTG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-22 | 66 | 137 | 3 | 79 | Disease resistance protein RRS1 |
5w3x_D | 3e-22 | 66 | 137 | 3 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016478675.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
TrEMBL | A0A1S4AQ37 | 0.0 | A0A1S4AQ37_TOBAC; probable WRKY transcription factor 65 isoform X2 | ||||
STRING | XP_009758490.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58710.2 | 1e-60 | WRKY DNA-binding protein 69 |