PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478650.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 504aa    MW: 55260.6 Da    PI: 6.7542
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478650.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.67e-25195251259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk  + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y+++Hnh+
  XP_016478650.1 195 RDGYNWRKYGQKQVKIPQGSRSYYRCTHSECCAKK-IECSDHTNRVMEIIYRSQHNHD 251
                     7********************************98.*********************7 PP
2WRKY98.93.3e-31366423259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er+ + +++++itY+g H+h+
  XP_016478650.1 366 SDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERAIDSTSALIITYKGVHDHD 423
                     7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-21186253IPR003657WRKY domain
SuperFamilySSF1182902.88E-19192253IPR003657WRKY domain
SMARTSM007742.6E-23194252IPR003657WRKY domain
PfamPF031062.4E-17196251IPR003657WRKY domain
PROSITE profilePS5081118.177196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-32350425IPR003657WRKY domain
SuperFamilySSF1182901.96E-27359425IPR003657WRKY domain
PROSITE profilePS5081132.248360425IPR003657WRKY domain
SMARTSM007743.1E-36365424IPR003657WRKY domain
PfamPF031061.8E-24367422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDEENESSKA AGAENSNPEE NKNDNSSVHD GGVLDGGGDE RKESGIESLH EPKVEISVSE  60
TLAHPTVHSS VQQIESDVQS KFDTDSSSAH QLSEVPVEYA LPPFEPAKEI KDKISVTRPE  120
TLSAQVQTQH QQRMPDEASS LELSPTSVTP SISSLPSPTL AERQLSAVVN GSTEEVAKQS  180
SDAKVVVPVL KTPSRDGYNW RKYGQKQVKI PQGSRSYYRC THSECCAKKI ECSDHTNRVM  240
EIIYRSQHNH DPPPRVNCSK ESKPVVLPAP ANDSRMIACP NRSFNETVPS SLKENLQETS  300
PIAEKANQDS CGSDTDTEIT IKEEHSDEPE QKKRLKKSDA SSESVSRPGK KPKLVVHAAC  360
DVGISSDGYR WRKYGQKMVK GNPHPRNYYR CTSAGCPVRK HIERAIDSTS ALIITYKGVH  420
DHDMPVPKKR QSPPSAPLIA AAAPASFTNL QAKKPELLQH QKSTTQWSVD KEGALTGEKL  480
DLGGEKAMES ARTLLSIGFE IKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-27353425274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478650.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595831e-113WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1S4AQ120.0A0A1S4AQ12_TOBAC; probable WRKY transcription factor 32
STRINGXP_009624879.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-105WRKY DNA-binding protein 32