PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478624.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 525aa    MW: 57884.3 Da    PI: 7.397
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.3e-30245302260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK v+g+ef+rsYY+Cts++C +kk+vers+ d+++++i+Y  +H+h+k
  XP_016478624.1 245 EDGYNWRKYGQKLVRGNEFTRSYYKCTSPNCLAKKQVERSH-DGHITNIHYIAKHEHPK 302
                     7****************************************.***************85 PP
2WRKY105.33.2e-33420478159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+ver+++dpk+v++ Yeg+H+he
  XP_016478624.1 420 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSAGCPAKKHVERASHDPKLVVTAYEGQHDHE 478
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-26238303IPR003657WRKY domain
PROSITE profilePS5081123.227239303IPR003657WRKY domain
SuperFamilySSF1182902.22E-23241303IPR003657WRKY domain
SMARTSM007749.3E-32244302IPR003657WRKY domain
PfamPF031063.2E-22245301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-34406480IPR003657WRKY domain
SuperFamilySSF1182907.98E-29412480IPR003657WRKY domain
PROSITE profilePS5081135.645415480IPR003657WRKY domain
SMARTSM007743.5E-38420479IPR003657WRKY domain
PfamPF031063.7E-26421477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGTHNKDVTD EVSSEKLQRK QDLDAVTYRS ESKEKGICES MSAEVISGEL QKRVSPDALE  60
KSSQSNQDEN ALSTTCQEVS GEVKPKKSVV EGIEKFQQKP DPDTLTNRSE SKEKGTCDSV  120
SAEVVSDELL KGLSPDSLAK ASESSRVSVL PKKEPYIKSC ESDSPVKDRN VSLVPGKASE  180
SSQHIQREKM EVVVSQPNQE QVTCSTRPEK ALDKLQPRRN LDTSVQALPS DQEITPFRSP  240
EKPSEDGYNW RKYGQKLVRG NEFTRSYYKC TSPNCLAKKQ VERSHDGHIT NIHYIAKHEH  300
PKPLDSPQIS PEFVVPMQLK QTNMPMGTSR EGKKSIVIGQ TCQSIEPSES SLSAAIVPAG  360
GSATDTVLKP HKSGDEADNS GGPDAKRQKR EVPRSDEIPP IKSHSEPQHI VQTRSEVDIV  420
NDGYRWRKYG QKLVKGNPNP RSYYRCSSAG CPAKKHVERA SHDPKLVVTA YEGQHDHEIP  480
PSRTVMQNSA GADSNNTTRI SGESTSESGE NKHVGLDRVV HIGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-34246481475WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-173HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478624.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
TrEMBLA0A1S4APL90.0A0A1S4APL9_TOBAC; probable WRKY transcription factor 2 isoform X2
STRINGXP_009605529.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.25e-74zinc-dependent activator protein-1