PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016478549.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1010aa MW: 110203 Da PI: 5.4887

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	604	655	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_016478549.1 604 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 655 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	594	675	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	607	655	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-18	914	1000	No hit	No description
SMART	SM00666	4.6E-20	915	997	IPR000270	PB1 domain
PROSITE profile	PS51745	18.953	915	997	IPR000270	PB1 domain
Pfam	PF00564	1.5E-15	916	996	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.5E-20	916	996	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1010 aa Download sequence Send to blast
MAEPEEKITS KYLPTKSKEF SPPPPPQQSP YTAAARESTT MMMDLDLDID ASWSFDQIFA 60 AAAAVSSNPA SPFLPCSPLW AFSDDIDEKP AGNSFSGALR LSSHPRFGAT YTDDPEATTE 120 TVSVNADKGR LPSPILELAP RDYPNGSCII KERMTQALRY FKESTGERVL AQVWAPVKDA 180 GRYVLTTSGQ PFVLDPDCNG LHQYRTVSLM YMFAADGETG GVLGLPGRVF RLKLPEWTPN 240 VQYYSSKEFP RLDHALHYNV RGTLALPVFE PSGQSCLGVL ELIMTSQKIN YAAEVDKVCK 300 ALETVNLKSS EILDHPNTQI CNEGRQNALV EILEILTAVC ETYQLPLAQT WVPCRHRSVL 360 ADGGGLKKSC SSFDGSCMGQ ICMSTTDVAF YVVDAHMWGF REACAEHHLQ KGQGVAGRAY 420 ASQKSCFCED ITQFCKTEYP LVHYARLFGL TSCFAICLRS SHTGNDDYIL EFFLPPNSGD 480 YSDQQALLNS LLLTMKQHFR SLSIASGEEL EHDWSSVEII KASMEEKIDA KPESVPAPKS 540 LPQPTRLPNG RTHLDPLGEQ QFSVESDVAK GAGSKSGTGE APNHISPSDN KPTGKKSERK 600 RGKAEKTISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLS 660 KLKCVIESVQ GTEGAFTLTS LAPNSLPTAV GSISWPACAS GSNLPSSPLS KPSVFHEEKN 720 EFSNHGTPES HEEAEPSNQM LGGRVTRKEE FIPQNGSLRA EGSHKSRTGS VSREESAGTP 780 TSQGSCQGSP SAGNEFSPQN DLVNSPAHEA CMKVGGSLEA AHQTTTENNL AAAFLIPRPF 840 IPERAQEPFG GMLVEDAGSS HDLRNLCPAG DALVDECVPE YGLQNPPFSD KIAKDPVYVP 900 ADTLPQYSAW PEVTFVTIKA AYREDIIRFR LCLNSGIVKL NEEVAKRLKL ELGTFDIKYR 960 DDDLELVSIS CDADLQEYVD ISLSSGSSIV RLLVHDIMSN LGSSCESSGK

Sequence ? help Back to Top

Protein Sequence Length: 1010 aa Download sequence Send to blast

MAEPEEKITS KYLPTKSKEF SPPPPPQQSP YTAAARESTT MMMDLDLDID ASWSFDQIFA  60
AAAAVSSNPA SPFLPCSPLW AFSDDIDEKP AGNSFSGALR LSSHPRFGAT YTDDPEATTE  120
TVSVNADKGR LPSPILELAP RDYPNGSCII KERMTQALRY FKESTGERVL AQVWAPVKDA  180
GRYVLTTSGQ PFVLDPDCNG LHQYRTVSLM YMFAADGETG GVLGLPGRVF RLKLPEWTPN  240
VQYYSSKEFP RLDHALHYNV RGTLALPVFE PSGQSCLGVL ELIMTSQKIN YAAEVDKVCK  300
ALETVNLKSS EILDHPNTQI CNEGRQNALV EILEILTAVC ETYQLPLAQT WVPCRHRSVL  360
ADGGGLKKSC SSFDGSCMGQ ICMSTTDVAF YVVDAHMWGF REACAEHHLQ KGQGVAGRAY  420
ASQKSCFCED ITQFCKTEYP LVHYARLFGL TSCFAICLRS SHTGNDDYIL EFFLPPNSGD  480
YSDQQALLNS LLLTMKQHFR SLSIASGEEL EHDWSSVEII KASMEEKIDA KPESVPAPKS  540
LPQPTRLPNG RTHLDPLGEQ QFSVESDVAK GAGSKSGTGE APNHISPSDN KPTGKKSERK  600
RGKAEKTISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLS  660
KLKCVIESVQ GTEGAFTLTS LAPNSLPTAV GSISWPACAS GSNLPSSPLS KPSVFHEEKN  720
EFSNHGTPES HEEAEPSNQM LGGRVTRKEE FIPQNGSLRA EGSHKSRTGS VSREESAGTP  780
TSQGSCQGSP SAGNEFSPQN DLVNSPAHEA CMKVGGSLEA AHQTTTENNL AAAFLIPRPF  840
IPERAQEPFG GMLVEDAGSS HDLRNLCPAG DALVDECVPE YGLQNPPFSD KIAKDPVYVP  900
ADTLPQYSAW PEVTFVTIKA AYREDIIRFR LCLNSGIVKL NEEVAKRLKL ELGTFDIKYR  960
DDDLELVSIS CDADLQEYVD ISLSSGSSIV RLLVHDIMSN LGSSCESSGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803235.1	0.0	PREDICTED: protein NLP7-like isoform X2
Refseq	XP_016478549.1	0.0	PREDICTED: protein NLP7-like isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S4APG2	0.0	A0A1S4APG2_TOBAC; protein NLP7-like isoform X2
TrEMBL	A0A1U7YWW0	0.0	A0A1U7YWW0_NICSY; protein NLP7-like isoform X2
STRING	XP_009803234.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]