PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016478470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 32869.1 Da PI: 7.2751 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++++ g+ R+ k+c++rw +yl XP_016478470.1 14 KGPWTPEEDIVLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 7.9e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_016478470.1 67 RGNFTPHEEGMIVHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.939 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.585 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.2E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.39E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRPPCCDKI GIKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIVH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ 120 TGLDSHLTSP PPADSTTCDH FSWHFMSDNN KQGSKLLLQQ NHNSPNSSSS LYASSTENIS 180 RLLEGWMRSS PNPSTKINEM IFHENQHNQD DQDLFISCET SLVQDEGISN SIKTIPREYK 240 SVISACESSG VAEKTMNTNT PPPFTYLEKW LLEENAGQVE ELMGLPMIFT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP249696 | 1e-132 | KP249696.1 Solanum lycopersicum R2R3 MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772442.1 | 0.0 | PREDICTED: myb-related protein 306-like isoform X1 | ||||
Refseq | XP_016478470.1 | 0.0 | PREDICTED: transcription factor MYB30-like isoform X1 | ||||
Swissprot | B3VTV7 | 1e-109 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A1S4APK6 | 0.0 | A0A1S4APK6_TOBAC; transcription factor MYB30-like isoform X1 | ||||
TrEMBL | A0A1U7VXD2 | 0.0 | A0A1U7VXD2_NICSY; myb-related protein 306-like isoform X1 | ||||
STRING | XP_009772442.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08810.1 | 1e-95 | myb domain protein 60 |
Publications ? help Back to Top | |||
---|---|---|---|
|