PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016478448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 372aa MW: 40598.1 Da PI: 9.2881 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81 | 1e-25 | 143 | 186 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e XP_016478448.1 143 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 186 79***************************************987 PP | |||||||
2 | QLQ | 45.2 | 2.9e-16 | 74 | 109 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ Q+q+L+ Q+l+y+++ a++PvPpeLl ++ XP_016478448.1 74 SYFSLGQWQELELQALIYRHFTAGAPVPPELLHLVK 109 789****************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-7 | 74 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.866 | 75 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-10 | 76 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.141 | 143 | 187 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-21 | 144 | 186 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDFNLKQWRN QQHESEEQET PTSSAKIPRL HLDFDSVSAS DSDSALPLFV SEPTTKLSDS 60 TTTTPTKFPK MGSSYFSLGQ WQELELQALI YRHFTAGAPV PPELLHLVKK SIITSPSSYY 120 FSHPFQQYPH YQQTCYWGRA AMDPEPGRCR RTDGKKWRCS RDVVAGQKYC ERHVHRGRSR 180 SRKPVEIPTP AINGGKLNTS TTVSHQNLAK MAGHSAAAAA ATHFSISGPS PSIQTLHLNQ 240 RPSESKKGPL EAQKDVVSSD GKSSGQILRQ FFDDWPSQLQ EVDNVGSNSS SVASATSLSI 300 SMPGNPSSDF SLKLSTGGDG YNTDAQVGNV QRSAWRTSMG GGPLAEALRS STTNSSPTSV 360 LHQLPRGSTS LT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013977 | 2e-57 | BT013977.1 Lycopersicon esculentum clone 133022R, mRNA sequence. | |||
GenBank | HG975449 | 2e-57 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 2e-57 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016478448.1 | 0.0 | PREDICTED: growth-regulating factor 3-like isoform X2 | ||||
TrEMBL | A0A1S4APN7 | 0.0 | A0A1S4APN7_TOBAC; growth-regulating factor 3-like isoform X2 | ||||
STRING | XP_009771979.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 3e-72 | growth-regulating factor 4 |