PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016478447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 376aa MW: 41011.5 Da PI: 9.4512 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81 | 1.1e-25 | 147 | 190 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e XP_016478447.1 147 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 190 79***************************************987 PP | |||||||
2 | QLQ | 45.2 | 2.9e-16 | 74 | 109 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ Q+q+L+ Q+l+y+++ a++PvPpeLl ++ XP_016478447.1 74 SYFSLGQWQELELQALIYRHFTAGAPVPPELLHLVK 109 789****************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-7 | 74 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.866 | 75 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-10 | 76 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.141 | 147 | 191 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-21 | 148 | 190 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MDFNLKQWRN QQHESEEQET PTSSAKIPRL HLDFDSVSAS DSDSALPLFV SEPTTKLSDS 60 TTTTPTKFPK MGSSYFSLGQ WQELELQALI YRHFTAGAPV PPELLHLVKK SIITSPSSYY 120 FSHPFQQYPH YQQTLMQSGY WGRAAMDPEP GRCRRTDGKK WRCSRDVVAG QKYCERHVHR 180 GRSRSRKPVE IPTPAINGGK LNTSTTVSHQ NLAKMAGHSA AAAAATHFSI SGPSPSIQTL 240 HLNQRPSESK KGPLEAQKDV VSSDGKSSGQ ILRQFFDDWP SQLQEVDNVG SNSSSVASAT 300 SLSISMPGNP SSDFSLKLST GGDGYNTDAQ VGNVQRSAWR TSMGGGPLAE ALRSSTTNSS 360 PTSVLHQLPR GSTSLT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016478447.1 | 0.0 | PREDICTED: growth-regulating factor 3-like isoform X1 | ||||
TrEMBL | A0A1S4ANY4 | 0.0 | A0A1S4ANY4_TOBAC; growth-regulating factor 3-like isoform X1 | ||||
STRING | XP_009771979.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 2e-70 | growth-regulating factor 4 |