PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478382.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 421aa    MW: 46198.6 Da    PI: 6.3584
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.21.7e-39592092136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasnsssg....... 88 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ + ++++a++ ++e++ss++ +++ +       
  XP_016478382.1  59 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLeGFPDAQQLSDEKRSSAGVEPGFDaadveld 153
                     689*************************************************************8445553333333333322222224445555 PP

             TCP  89 .......kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                            ++++++++s++s++s+ s l+l++ esr kar ra+er  ek++ k+k+
  XP_016478382.1 154 dddpnfnQQQQQQPCSSNSETSKGSGLSLSRsESRIKARGRANERAVEKKKEKEKE 209
                     55555547788888********************************9999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3960205IPR005333Transcription factor, TCP
PROSITE profilePS5136931.17561119IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.677185206IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEIEEIQAQE CKFPRISNKI GYRDEELDDV GEVKKSSFGD IGKLYGWPSS RIVRVSRASG  60
GKDRHSKVWT SKGLRDRRVR LSVNTAIQFY DLQDRLGCDQ PSKAVEWLLK AAAPSIAELP  120
PLEGFPDAQQ LSDEKRSSAG VEPGFDAADV ELDDDDPNFN QQQQQQPCSS NSETSKGSGL  180
SLSRSESRIK ARGRANERAV EKKKEKEKES DHHQNMHPSS SFTELLAGGM SNNNNNNNNR  240
NTSPIHQNTQ RQWSTNPLEY FTSGLLDPSS TRGIDNSTGF SGQVYLGNPL QPLIAVSSPM  300
FSISGDHQPE LQHFPFGGNN LVPVVTANGE SNTQSNTSNE YNLNFSISRG TLQSNSSSTS  360
PSILPHHFQR FSPIDGSQSL FLGTTMATAA APNAAALYDA PLQLFYGNGY NHSDQKGKGK  420
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2166120155Putative transcription factor PCF6
5zkt_B1e-2166120155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478382.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1S4ANR40.0A0A1S4ANR4_TOBAC; transcription factor TCP2-like
STRINGXP_009591865.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2