PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478339.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 265aa    MW: 29486.7 Da    PI: 8.1471
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.91.4e-3447105259
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     ++v+YkeClkNhAas+GghavDGCgEfmps+++  +++++lkCaACgCHRnFHRre++e
  XP_016478339.1  47 AAVTYKECLKNHAASIGGHAVDGCGEFMPSPDSIpSNPTSLKCAACGCHRNFHRREPAE 105
                     6799****************************999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-2949103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2549111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-3150102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.99751102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.9E-20150220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-30152221IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-25159216IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MELTCSSNPT KSTLDSENDT PPLIKPLSFS NGTLKNHHFH HQQPPCAAVT YKECLKNHAA  60
SIGGHAVDGC GEFMPSPDSI PSNPTSLKCA ACGCHRNFHR REPAEDNSSP THFPSHFINF  120
RHHILPPIRR FSPSPSSSPP PPLQPQPITP KAEYNPSGRK RFRTKFTQEQ KEKMHSFSEK  180
LGWKLQKCDE AKVEEFCNEV GVGKGVLRVW MHNNKNTFAK KDDHNNTNGF NINDSSSNED  240
HNNNNDSNNC GLHLHISTNG SSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-221602171875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478339.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG06e-58ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S4ANV40.0A0A1S4ANV4_TOBAC; zinc-finger homeodomain protein 9-like
STRINGXP_009788342.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.14e-59homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]