PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478305.1
Common NameERF115
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 227aa    MW: 25723.5 Da    PI: 8.4667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98e-16104154255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y GV +++ +g + AeIrdp  +g  +r +lg++ t+e+Aa a+++a+ k++g
  XP_016478305.1 104 RYIGVKRRP-WGTFSAEIRDPERRG--ARLWLGTYETPEDAALAYDQAAFKIRG 154
                     699***9*9.**********84444..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.04E-25104164No hitNo description
SMARTSM003808.7E-31104168IPR001471AP2/ERF domain
PROSITE profilePS5103222.405104162IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-20104163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-29104163IPR001471AP2/ERF domain
PfamPF008477.0E-11104154IPR001471AP2/ERF domain
PRINTSPR003671.6E-10105116IPR001471AP2/ERF domain
PRINTSPR003671.6E-10144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MNPANATFSF SELDFLQSIE NHLLNYDSDF SEIFSPMSSS NALPNSPSSS FGSFPSAENS  60
LDTSLWDENF EETIQNLEEK SESEEETKGH VVAREKNATQ DWRRYIGVKR RPWGTFSAEI  120
RDPERRGARL WLGTYETPED AALAYDQAAF KIRGSRARLN FPHLIGSNIP KPARVTARRS  180
RTRSPQPSSS SCTSSSENGT RKRKIDLINS IAKAKFIRHS WNLQMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-26103168469ATERF1
3gcc_A7e-26103168469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8281490.0AB828149.1 Nicotiana tabacum ERF115 mRNA for ethylene response factor 115, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478305.11e-166PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A1S4AP501e-165A0A1S4AP50_TOBAC; ethylene-responsive transcription factor 1-like
STRINGXP_009781920.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-33ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Shoji T,Kajikawa M,Hashimoto T
    Clustered transcription factor genes regulate nicotine biosynthesis in tobacco.
    Plant Cell, 2010. 22(10): p. 3390-409
    [PMID:20959558]