PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478100.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 334aa    MW: 38944.1 Da    PI: 7.1675
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.87.9e-27207256352
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +++ ledlskyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl
  XP_016478100.1 207 ARLALEDLSKYFDLPIVEASKSLKVGLTVLKKKCREFGIPRWPHRKIKSL 256
                     6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.213191276IPR003035RWP-RK domain
PfamPF020422.6E-22209256IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQWECASLHS TFLLPNYSFS FLYQNSLFSL SVSVLSLMAS SQNRTLTALV IFQNFLYPVM  60
FRSVHVYRTE GGKEEMEERE YLFHETSNFE ETGFAPVITL HKFDVSAQFV RIENGVWKCM  120
FVYDSGRHQS TSTNASPDWL SFAEDSSGRS STEESGSNNS KSNQPDVKRC VPFLDLNSLP  180
YSDSDIEEND QNVSENKKRR AGTKDIARLA LEDLSKYFDL PIVEASKSLK VGLTVLKKKC  240
REFGIPRWPH RKIKSLDSLI HDLQEEMQRQ QEEDELAAIA VEKRKRMIEY ERESIEKKPF  300
MDIQKETKKF RQDIFKRRYK ARVLENQCRT LPLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478100.10.0PREDICTED: protein RKD5-like isoform X2
TrEMBLA0A1S4ANA40.0A0A1S4ANA4_TOBAC; protein RKD5-like isoform X2
STRINGXP_009766399.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.14e-49RWP-RK domain-containing protein