PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016478099.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 361aa MW: 42014.7 Da PI: 6.8776

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478099.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.6	8.8e-27	234	283	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ ledlskyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl XP_016478099.1 234 ARLALEDLSKYFDLPIVEASKSLKVGLTVLKKKCREFGIPRWPHRKIKSL 283 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.213	218	303	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-22	236	283	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MQWECASLHS TFLLPNYSFS FLYQNSLFSL SVSVLSLMAS SQNRTLTALV IFQNFLYPVM 60 FRSVHVYRTE GGKEEMEERE YLFHETSNFE ETGFAPVITL HKFDVSAQFV RIENGVWKCM 120 FVYDSGRHQS TSTNASPDWL SFAENPKMDF IPTLANDLRA ISELALNVEF RDSSGRSSTE 180 ESGSNNSKSN QPDVKRCVPF LDLNSLPYSD SDIEENDQNV SENKKRRAGT KDIARLALED 240 LSKYFDLPIV EASKSLKVGL TVLKKKCREF GIPRWPHRKI KSLDSLIHDL QEEMQRQQEE 300 DELAAIAVEK RKRMIEYERE SIEKKPFMDI QKETKKFRQD IFKRRYKARV LENQCRTLPL 360 F

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MQWECASLHS TFLLPNYSFS FLYQNSLFSL SVSVLSLMAS SQNRTLTALV IFQNFLYPVM  60
FRSVHVYRTE GGKEEMEERE YLFHETSNFE ETGFAPVITL HKFDVSAQFV RIENGVWKCM  120
FVYDSGRHQS TSTNASPDWL SFAENPKMDF IPTLANDLRA ISELALNVEF RDSSGRSSTE  180
ESGSNNSKSN QPDVKRCVPF LDLNSLPYSD SDIEENDQNV SENKKRRAGT KDIARLALED  240
LSKYFDLPIV EASKSLKVGL TVLKKKCREF GIPRWPHRKI KSLDSLIHDL QEEMQRQQEE  300
DELAAIAVEK RKRMIEYERE SIEKKPFMDI QKETKKFRQD IFKRRYKARV LENQCRTLPL  360
F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016478099.1	0.0	PREDICTED: protein RKD5-like isoform X1
TrEMBL	A0A1S4AN90	0.0	A0A1S4AN90_TOBAC; protein RKD5-like isoform X1
STRING	XP_009766399.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14425	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-63	RWP-RK domain-containing protein