PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016477937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 512aa MW: 56611.2 Da PI: 5.126 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ r g+ R++k+c++rw ++l XP_016477937.1 27 KGPWTATEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 74 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.8e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++ XP_016477937.1 80 KGAFSPEEERIIIELHAKFGNK-WARMAAQLP-GRTDNEIKNYWNT 123 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.314 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-30 | 25 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-13 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.10E-11 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 26.38 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.98E-12 | 82 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 82 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 512 aa Download sequence Send to blast |
MAPDDRGTKV SSGGGRTGGT SRQALKKGPW TATEDAILME YVKKHGEGNW NAVQRNSGLM 60 RCGKSCRLRW ANHLRPNLKK GAFSPEEERI IIELHAKFGN KWARMAAQLP GRTDNEIKNY 120 WNTRLKRRQR AGLPLYPQEL QQQNQQENNQ HQSLLSSPYD PKRATYNNNN PPSFSLLDIF 180 NPSTMKPSIT QQFPLSNNTI FQDPPKGISL TLPSSIRNSQ FSSLPTSVPN NNFGHGLSNS 240 MPVPVPVPSF QNNYPSFNNF TTRPFTGNIH SNPNELISGI GGINNINYPS RQSSIPVTAS 300 SSENTGSDFG SSDANNYANV AGLSRGNSGL LEDLLEESQT LTTRAVKIED QTNYLDLKEE 360 EADYKGKSLW EDYGLVEEDG EEAILTEESV YSFAHGVDVT LNSNSESSSP DPNLSSGKLE 420 KEVSLQGINQ VDDDIMCLLD NFPLAVPVPN WYDERDGKNN SNGQLSNVTN GDNKAENQAE 480 DSNKSQVVTN SGPRNHDWEL GGCCWNNMPS FC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 25 | 128 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF198499 | 1e-104 | AF198499.1 Nicotiana tabacum anther-specific myb-related protein 1 (mybAS1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016477928.1 | 0.0 | PREDICTED: transcription factor MYB28-like | ||||
Refseq | XP_016477937.1 | 0.0 | PREDICTED: transcription factor MYB28-like | ||||
TrEMBL | A0A1S4AMI7 | 0.0 | A0A1S4AMI7_TOBAC; transcription factor MYB28-like | ||||
STRING | XP_009773212.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32460.2 | 2e-71 | myb domain protein 101 |