PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016477908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 31228.9 Da PI: 6.2609 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++ ++G +W+ ++ g+ Rt+k+c++rw +yl XP_016477908.1 19 KGAWSPEEDQKLKSYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 66 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 32.2 | 2.5e-10 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE ++ ++lG++ W+ Ia++++ gR ++++k++++++l XP_016477908.1 72 RGPFSIEERGTVIKTYQELGNR-WSEIAARLP-GRADNEVKNFFHTHL 117 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.784 | 14 | 70 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.69E-27 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-9 | 21 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 70 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-7 | 71 | 119 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.224 | 71 | 121 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.9E-9 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.66E-4 | 74 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MSSVPQQQQE STNMEEIKKG AWSPEEDQKL KSYIMRYGIW NWSHMPKFAG LSRTGKSCRL 60 RWMNYLRPDV KRGPFSIEER GTVIKTYQEL GNRWSEIAAR LPGRADNEVK NFFHTHLKKH 120 LGVKNDAPLK STRAKSNKRV VKKTKGNERT NGDKRSPEVS SSDSSSIITF EENQMMDVSV 180 NLSQIYYNIV DQPNIDMEIR PVILESNPDD GTYNSNCQQL HDQFEYSHSI SECCSSFDSI 240 DQFDMSSFWF DELWDAETYE FLRDVITY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-23 | 16 | 119 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 3e-33 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 3e-33 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793776.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Refseq | XP_016477908.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SJX8 | 4e-46 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A1S4AN84 | 0.0 | A0A1S4AN84_TOBAC; myb-related protein Myb4-like | ||||
TrEMBL | A0A1U7XVY4 | 0.0 | A0A1U7XVY4_NICSY; myb-related protein Myb4-like | ||||
STRING | XP_009793776.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-46 | myb domain protein 14 |
Publications ? help Back to Top | |||
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