PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016477658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 584aa MW: 65910.7 Da PI: 4.8484 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 294.8 | 2.3e-90 | 214 | 582 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkf 93 lv+lLl++Ae v++++++la++ +ar as +g+p+qRl +yf eAL++r+ r++ + + ++ + + s+ ++ al+ + P+ ++ XP_016477658.1 214 LVHLLLAAAEEVDQQQFHLASQSIARCLWKASVTGNPIQRLCFYFGEALQERIDRET-GRSPSFerKLRVLSTLALGTTPEALT-CHTEIPFSQV 306 68*****************************************************22.22222201222222222333333333.55667***** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 +++ qaI e v+g++++H +Df+i G+Q L+qaLa++ + l+iT++g+ ++ke++eetg+rL++fA++l++pf+f+++ +++++ XP_016477658.1 307 MQFAGVQAIIENVKGATKIHLVDFNIRTGIQCTGLMQALAEQCdCPIELLKITAIGH---QEKEKIEETGKRLQNFANSLNLPFSFDIVFMSDMK 398 ****************************************998345559********...579******************************** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 dl+ e+ +vk +E++aV + l ++ + +++ d++++++++l+P vvvv+e ea+hns+sFl+rf+eal +y +lfd++e + r++ +r XP_016477658.1 399 DLRAESVNVKADETVAVYCNAVLRTMI----CRPEYMDNTIRVIRGLRPSVVVVCEVEANHNSPSFLNRFVEALFFYGVLFDCFEDCMDRDNLAR 489 *************************99....56666667******************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +E + +g+ i+n+va+egaer+ r+ +l Wr+ + ++G+ +++lse+ qa+l+l++++ + +v+++ ++l+ gWk+ ++ svS W+ XP_016477658.1 490 KRIEVFHIGEGIRNMVAAEGAERFTRNMKLDVWRAYFARFGMVEMELSESSWYQANLILKQFSqGSSCNVQNDGKALLVGWKGTAIESVSIWK 582 ***************************************************************88889************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.512 | 188 | 561 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.9E-88 | 214 | 582 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MDQVSIPAID FSVFQAGHNH LQECVRDELV NDGVIDPLFE LDSEDLDSLY SVFDLKYQEN 60 TSDKHVQLSE DQQQNISGYC TQSDDSSSNT DFPLQPVQIQ STFEASNRIQ PQVPRLGNFH 120 GEKTNPISSA SLELLNNCGR LFKKSSEENL SNVHINEAHV GNIPKLSTEE ILRVAGERYI 180 QYSTQRVDGL SMFIHPYASA LSGLSIEQTR DMELVHLLLA AAEEVDQQQF HLASQSIARC 240 LWKASVTGNP IQRLCFYFGE ALQERIDRET GRSPSFERKL RVLSTLALGT TPEALTCHTE 300 IPFSQVMQFA GVQAIIENVK GATKIHLVDF NIRTGIQCTG LMQALAEQCD CPIELLKITA 360 IGHQEKEKIE ETGKRLQNFA NSLNLPFSFD IVFMSDMKDL RAESVNVKAD ETVAVYCNAV 420 LRTMICRPEY MDNTIRVIRG LRPSVVVVCE VEANHNSPSF LNRFVEALFF YGVLFDCFED 480 CMDRDNLARK RIEVFHIGEG IRNMVAAEGA ERFTRNMKLD VWRAYFARFG MVEMELSESS 540 WYQANLILKQ FSQGSSCNVQ NDGKALLVGW KGTAIESVSI WKFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-42 | 232 | 582 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016477658.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S4AMK0 | 0.0 | A0A1S4AMK0_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009616214.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 7e-48 | RGA-like 1 |