PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477421.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 294aa    MW: 30792 Da    PI: 9.7273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-063659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_016477421.1 36 KSKPCTKFFSTAGCPFGENCHFLH 59
                    7789******************** PP
2zf-CCCH25.32.6e-0897121226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kt+lC+ f     Ck+Gd+C+FaHg
  XP_016477421.1  97 KTKLCNKFNSAEGCKFGDKCHFAHG 121
                     89**********************9 PP
3zf-CCCH37.44.4e-12261285126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +fa+ G C +G+rC+FaHg
  XP_016477421.1 261 YKTKLCENFAK-GSCTFGERCHFAHG 285
                     9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843462IPR000571Zinc finger, CCCH-type
SMARTSM003560.773461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-63561IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-43659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-83659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-1393125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-894125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.64895123IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-495122IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-697121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.18E-15161236IPR004088K Homology domain, type 1
SMARTSM003222.2E-12165235IPR004087K Homology domain
PROSITE profilePS5008414.739166230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.5E-16167235IPR004088K Homology domain, type 1
PfamPF000131.1E-11168232IPR004088K Homology domain, type 1
CDDcd001056.87E-14168230No hitNo description
Gene3DG3DSA:4.10.1000.101.7E-16255291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-9258290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.831260287IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7260286IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDIRKRNRNE GGFNANGGFK KAKSEMDSLS SGIGSKSKPC TKFFSTAGCP FGENCHFLHY  60
VPGGYNAVAQ MMNMAPSPAS RNAAAPPMPN GNTPAVKTKL CNKFNSAEGC KFGDKCHFAH  120
GDWEIGKPIV PSQEDPRAMG AGPIPGRFGG RMEPPISGPA ASFGTSATAK ISVDASLAGA  180
IIGKGGVNSK QICRQTGAKL AIREHETDKN LRNIELEGSF EQISQASAMV RELISSLGSV  240
GGPGRAPAVQ GGGPPPPMSN YKTKLCENFA KGSCTFGERC HFAHGATELR KTGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614706.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016477421.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-110C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4AL760.0A0A1S4AL76_TOBAC; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009614706.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-89C3H family protein