PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016477232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 32127.1 Da PI: 9.9032 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.5e-15 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++ ++G +W+ ++ g+ Rt+k+c++rw +yl XP_016477232.1 19 KGAWSPEEDQKLKSYIIRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 66 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.4e-15 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g++T eE e+ +++ ++lG++ W+tIa++++ gR+++++k++++++l XP_016477232.1 72 KGPFTMEEREIVIKLYQELGSR-WSTIAAKLP-GRSDNDVKNFFYTHL 117 79********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.263 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-27 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-9 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 15.73 | 71 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 72 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 74 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.90E-9 | 74 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MSSVPQHQQK STNMEEIKKG AWSPEEDQKL KSYIIRYGIW NWSHMPKFAG LSRTGKSCRL 60 RWMNYLRSDV KKGPFTMEER EIVIKLYQEL GSRWSTIAAK LPGRSDNDVK NFFYTHLKKH 120 MGMKNDALLK SKARRKRVEK PQKSVGKINA EKAQERPVLF LAINNLTIGK SSNNSLTSPD 180 VSSSCSSSII TFGENQKMNI EMENTVILES NPEIYQSDCL SIESLDQFDT SSFWFIYLMM 240 PIVLFYERLI RICDLQRQIQ NLIFMGSSSR LYCSLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-23 | 6 | 119 | 14 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016477232.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1S4AKK3 | 0.0 | A0A1S4AKK3_TOBAC; myb-related protein Myb4-like | ||||
STRING | XP_009624781.1 | 1e-174 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 6e-45 | myb domain protein 15 |