PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016477230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22187.9 Da PI: 8.6043 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.8 | 8.3e-11 | 14 | 43 | 18 | 55 |
AP2 18 eIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++kr++lg+f taeeAa+a+++a+ ++g XP_016477230.1 14 Y--------RKKRIWLGTFETAEEAARAYDEAAILMNG 43 3........36**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.274 | 1 | 51 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-13 | 7 | 57 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-12 | 13 | 52 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-18 | 14 | 51 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-6 | 15 | 43 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.90E-18 | 16 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MISFCSKRPS LSAYRKKRIW LGTFETAEEA ARAYDEAAIL MNGQVAKTNF PIVKENHGNN 60 SNDKKFPLSS ASTLSTVLNA KLRKCCKDPA PSMTCLRLDN DNCHIGVWQK RSGKNSGSNW 120 ITKIELGKKE EPHQSHDSMN SWSLSSSSGS TSSSSSSELG ISKPLDEENR AAMQMVEELL 180 NCNSPFSSAP ISDLSPSFSN FK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-95 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 2e-95 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016477230.1 | 1e-147 | PREDICTED: ethylene-responsive transcription factor WIN1-like | ||||
TrEMBL | A0A1S4AKJ5 | 1e-146 | A0A1S4AKJ5_TOBAC; ethylene-responsive transcription factor WIN1-like | ||||
STRING | XP_009758054.1 | 1e-134 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1352 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25390.2 | 3e-41 | ERF family protein |